Ipomoea triloba (trilobed morning glory): 116032058
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Entry
116032058 CDS
T07384
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116032058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116032058
04121 Ubiquitin system [BR:
itr04121
]
116032058
03036 Chromosome and associated proteins [BR:
itr03036
]
116032058
03400 DNA repair and recombination proteins [BR:
itr03400
]
116032058
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
116032058
Ubiquitin system [BR:
itr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
116032058
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
116032058
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
116032058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_2
BRCT
zf-HC5HC2H
zf-C3HC4_2
zf-RING_2
zf-HC5HC2H_2
RTT107_BRCT_5
zf-C3HC4
zf-RING_UBOX
zf-RING_10
zf-C3HC4_3
zf-RING_6
zf-C3HC4_4
zf-RING_5
PTCB-BRCT
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
116032058
NCBI-ProteinID:
XP_031130309
LinkDB
All DBs
Position
10:complement(24149411..24155155)
Genome browser
AA seq
997 aa
AA seq
DB search
MADAAHLERMGRELKCPICLSLLNSAASLTCNHVFCNACIHASMKLAPNCPVCKVPYRPR
EIRPAPQMDNLVSIYKSLEAASGVNIFVTQTETSTKIAGEENKSASKTFGIEENDNIAMQ
TSEQNNKEGNERRGSKRSRKTKNGNCNPSSVKPSFPTKKRVQVPQHPPLESPLPTKLVAE
NDQVTASEPQRHPVINKGKGVLNEKGELNLSPFFWLRDDVEQSTQLSDDKKSTELLDEDH
ATDTPPGVPCFSDMKDSDDEFPLEMTPKSAAPGDIPKDAEFFDSEMFEWTQRPCSPELLS
SPLKLQVEDTYESEGLEQDTEATLMDLSILAEPKSRNRKSMDDENEMSKEEVSPPTLSSL
RNEISKIKGGLRKSSKRVRMIESKKKNGRMRSIQELMGVPSGSQKAKLSTKDFSNDNALN
MGKKSHDKKKEVGIGADSARVSLDQKEDSGGCDLKRNGKRRKVTVTQQQKVCNMSKSGKN
APKDRIIPTRDVAVNPYPLNTSAPINDDKEVTDSSSKVKSKVTRAGKSKHMKQVTFSEEI
FEDNIADGIQKFNEKNSSKETLTPENISNSLCMDTNSLSKIKKSLSNSSSSVLQKCETHP
TKIQCAFCHTAEESEDSGVMMHYLNGKPIKEDQIGETSVIHVHKNCAEWAPNVYFNEDDY
VINLETELKRSRSISCGFCGVKGAALGCYEKTCRKSFHVPCAKMTPNCQWDHYNFVMLCP
LHACCKLPCKEPEFQSKKKKKCELRNSCINQPQIAVKSDNRQDALWKCQRKNKSLVLCCS
AITDAERALVSDFERLSGATVLKTWDPSVTHIIASTNEKGACKRTFKFLMGVLGGKWILT
IEWIKACLNATELLDEQQYEIEVDTHGVRDGPRLGRLRTSNKQPKLFSGYKFYFMSDFLP
SYKKYLHDLVVAAGGNVLNRKPVSEDEKSHSSGCSSVSTFIVYSLELPDNCKTREKSSIL
DSRRSAAEALASSTGSLAASNSWILNCIAGCKLQDLE
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgctgcacatctagaaaggatgggaagagagctcaagtgtcccatctgcttg
agtctcttgaattcagctgcttcactcacgtgcaatcatgtattctgcaatgcctgtata
catgcatcaatgaagttggcgcccaattgtccagtttgtaaagttccttaccggcccaga
gaaatccgccctgctccccaaatggataacttggtcagcatttataagagcttggaagct
gcttcaggagtcaacatatttgttactcaaactgaaacttcaactaaaatagcaggtgaa
gaaaacaaatctgcaagcaagacctttggaattgaagagaatgacaatattgccatgcag
acttcagaacaaaataataaggaaggaaatgaaagaagagggtcaaaaagatcaaggaag
actaaaaatggaaattgcaatccatcttctgttaagccttcctttcctacaaagaaaagg
gtccaagtgccacagcatccaccattagaaagcccactgcctacaaaattggttgctgaa
aatgatcaagtaactgccagtgaacctcagagacatcctgtcataaacaagggcaagggg
gttttaaatgagaagggagagctaaaccttagtccctttttctggctgagagatgatgtc
gaacagtcaactcagctatcagatgacaaaaagtcaactgagctattggatgaggatcat
gccacagatacccctccaggtgttccttgttttagtgatatgaaagattctgatgacgaa
tttcctcttgagatgaccccaaaaagtgctgcccctggtgacattccaaaggatgcagaa
ttttttgatagtgagatgtttgaatggacacaaaggccttgctcccctgaactcctttca
agcccattgaaactgcaggtagaagatacttacgaatctgaaggacttgaacaggataca
gaggctaccttaatggatttaagtattcttgctgaacccaaaagtcgcaacagaaaaagc
atggatgatgaaaatgaaatgagcaaggaagaggtgagtccacccactttatcttctcta
aggaatgagatctctaaaattaaaggtggccttagaaagtctagcaaaagagtgcggatg
attgagagcaaaaagaaaaatggccgtatgagatcaattcaagaactaatgggagtcccc
agtggatcacaaaaagccaaactgagtaccaaagatttttccaatgataatgcattgaat
atggggaagaaaagtcatgacaagaagaaagaggttggtattggtgctgattctgcacga
gtttcattggatcagaaagaagacagtggagggtgtgacttaaagagaaatggcaaaaga
agaaaggtaactgtcacccagcaacaaaaagtttgtaacatgtcaaaaagtggaaagaat
gctcctaaggacagaatcattccaacaagagatgtggctgtgaatccctatccacttaat
acatcagcacctatcaatgatgataaggaagttacagattctagttcaaaagtaaagagt
aaagttacacgtgctgggaagtcaaagcacatgaaacaggtgacattttctgaagaaatt
tttgaggataatattgcagatggcatccagaagtttaatgagaagaactccagtaaggaa
actctgactccagaaaatatttcaaacagcttgtgtatggacacaaatagtttgtcaaaa
ataaaaaagtcactttccaattcaagtagttcagttttgcaaaagtgtgagacacacccg
acaaaaatccaatgtgcattttgccatactgcagaagagtctgaggattcaggagttatg
atgcactatcttaatgggaagccaattaaagaagaccagattggagaaacaagtgtcata
catgtgcataaaaattgtgcagagtgggccccaaatgtatattttaatgaagatgattat
gtcattaatcttgaaactgaactgaagaggagtaggtctatttcttgtggcttctgtgga
gttaaaggggcagctctgggctgctatgagaagacttgtcgcaagagttttcatgttccc
tgtgcaaagatgacaccaaactgtcaatgggaccattataatttcgtaatgttatgccct
ctacatgcttgttgtaaactgccgtgcaaggaacctgaattccaatcaaagaagaaaaag
aaatgtgaactgagaaattcttgtatcaatcaaccccaaattgctgtcaaatctgataat
agacaagatgcactttggaagtgtcaaagaaaaaataaaagcttggttctttgttgttca
gctatcactgatgcagagagggctttggtttccgactttgagaggttgtcaggtgcaaca
gtattaaagacttgggacccaagtgtaacccatatcattgcatctacaaatgagaagggg
gcatgtaaaagaacgttcaaatttttgatgggtgtcttggggggcaaatggatcctcaca
attgaatggatcaaagcttgcttgaatgctacagaacttcttgatgaacagcaatatgaa
attgaagttgatactcatggagtcagagatggccctagacttggcagattaagaacatca
aataagcaacctaagcttttcagtggatacaaattctattttatgagtgactttttacct
tcatacaaaaagtatttgcatgatcttgtggttgctgccgggggaaatgtcctgaacagg
aagcctgtttcagaagatgagaaaagccattcgtctggatgctcatcagtgtccactttc
atagtttacagccttgagctacctgataactgtaagactagagagaaaagttcaatctta
gacagcaggcgatcagctgcagaagctttggctagctcaacaggttctctagctgcaagc
aattcatggattctcaactgcattgcaggctgtaagttgcaagatcttgaatga
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