Ipomoea triloba (trilobed morning glory): 116032205
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Entry
116032205 CDS
T07384
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116032205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116032205
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116032205
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_12
TPR_16
TPR_8
Motif
Other DBs
NCBI-GeneID:
116032205
NCBI-ProteinID:
XP_031130525
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Position
10:14483721..14498423
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AA seq
861 aa
AA seq
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MDSPTYSSSMATSNNREGFSSAAVANDEGALSVISGLAKDAALLFQSGKFLDCIRVLLQL
QQKKAGDPKVLHNIAIAKSFQDEHSYPKSLIEELNEVKRLCNDHAGADGDHSESTGNVGR
KSAAGIKGNNIMSNQYSTLHSSPVLIDEFDTSMTMYNLAVSWFHLHEYAKAFSTLDALFQ
NIEPIDEVIAKHICFLLLDVALLSQNARRYVDVISYMEKVFCNNILVNQVENGNSAQQPS
PILAESVSLTSNSILDASNSESPPTAIKSEDSLARTLSDEGLEDELHLISSIEMSRKNPP
KQSGIQQSSNIIMKNQVVGSISTIDMRVKLHLCKVRFLLLTRNLKAAKREVKMAMNTAHG
KDYSLALYLKSQLEYARGNHRKAIKLLMASSNRTEVGMSSMYYNNLGCIYHQFGKHHTSA
VFYSKALSSCSSLRKEKPLKLSIISQDKSLLIVYNSGVQYLTCGKPLQAAQCFYKASVIF
YNKPLIWLRIAECCIMAFEKGLITYDSLVSSNKSDVMVHVVGKGKWRHLVIEDGLSRIRQ
ENSVGREDLAFGDRQPIPSMSLARQCLLNALHLLNCSESKHGVSSMSNATVTEDQLGGAV
SSKVASHNIVPGGVLKAPVVAMSGQVNENGEVKELKGGNSQNTSLLSFISDYDDICRKEN
HMIKQALLADLAYVELELGDPLRALSAARYLLKLPGCSRIYMFLGNLYAAEALCMLSRPK
EAVEHLSRYVSGGKGVDIPYSQEDLESCQVKTQDEESNGGSRSVNSLSPDGSQWLAFINP
EEARGILFANLAAVSAVQGSLELAKEFAVQALSIMPKRPQAILTAVYVDLLRGNTQEALT
KLKLCSSVRFLPTNLAMTGSL
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggattcgccaacttattcatcatcgatggccacatcgaataatcgagaaggtttttca
tcggctgcagtggcgaacgatgagggcgccctctccgtcatttctggacttgctaaggac
gccgctctgcttttccaatcggggaaattcttggactgtattagagttttgcttcagctg
cagcagaaaaaagcaggcgatccaaaagttcttcataacattgcaattgcaaagagcttt
caagatgagcattcatatcctaagagccttatagaagaactcaatgaggttaagaggtta
tgcaacgatcatgctggtgctgatggagatcattcagagtccactggtaatgttggaaga
aaatctgcagctggcattaaaggaaataatatcatgtcaaaccagtattctaccctacat
agttccccagtattgattgatgaatttgatacttcaatgacaatgtacaacctagcagtt
tcatggttccatctgcatgaatatgcaaaagcgttctcaactttggatgcattatttcag
aatattgaaccaatagatgaggtaatagcaaagcatatttgctttttgttgttggatgtt
gcactactttcccagaatgcaagaagatatgtggatgtgattagctatatggagaaggtc
ttctgtaacaatattttggtcaatcaagtggaaaatggaaactctgcccaacaaccctca
cccattttggcagaatctgtttcactcacaagcaattctattcttgatgcatctaattct
gaatcacctcctactgcaattaaatcagaagattctttagctagaacattgtcagatgag
ggacttgaagatgaattgcatttaatatcatctattgagatgagtagaaagaatccaccc
aaacaatctggcatacagcagtcttcaaatataattatgaagaaccaagtcgttgggtcc
atctccaccattgatatgagagttaagctacacctttgcaaggttcgttttctcctcctt
actaggaaccttaaggctgccaagcgtgaagttaagatggccatgaacactgcacatggc
aaagattattctttggcgctttatttgaagtcccagcttgaatatgctcgtgggaatcat
cgaaaagcaatcaagcttttgatggcttcaagtaataggacagaagttgggatgtctagc
atgtactacaataaccttggttgcatctatcatcaatttggcaagcatcatacctctgca
gtgttttactcaaaggcactaagtagctgctcatctctacgaaaggagaagcctttaaag
ctctcaatcatctcccaggataagtctctcctgatagtatataactctggtgtgcagtac
ttgacttgtgggaagcccttacaggctgcacagtgtttttacaaggctagtgtaatattc
tataacaaacctcttatatggctgcgaattgcagaatgttgtataatggcatttgagaag
ggactcataacttatgactctttggtgtcttctaataaatctgacgttatggttcatgtg
gttggaaaggggaagtggaggcaccttgtcatagaggatggactgtcaagaatcagacag
gagaattccgtgggaagggaagacttggcttttggtgatagacaacctattccctctatg
tcacttgctcggcaatgtcttttgaatgcattgcatttattgaactgttctgaatcaaaa
catggtgtatcctcaatgtccaatgctactgtcacagaagatcaattgggtggagctgta
tcatccaaggttgcaagccacaacattgtgccaggtggtgttctcaaggcacctgttgta
gcaatgtcaggtcaggttaatgaaaacggggaagtaaaagagctgaagggtggaaatagt
cagaatacctccctactgagcttcatctctgattatgatgatatatgtagaaaggaaaac
catatgattaaacaagcgcttttagctgatttggcttatgtagagttggaacttggggat
cctttaagagctctatccgcagcaaggtacctgctaaaactccccggatgttctagaata
tacatgttcttggggaatttatatgcagccgaggctctgtgcatgctgagccgaccaaaa
gaagctgtagagcacttgtcaaggtatgtatctggaggtaaaggtgttgatattccatat
agtcaagaggatttggaatcatgccaagtgaagacacaagatgaagagtcaaatggtggg
tctaggagtgtaaattcgttgtcacctgatggatctcaatggttagctttcatcaatcct
gaagaggcacgggggattctttttgcaaacttagctgctgtttctgcagtgcaaggatct
cttgagctggccaaagaatttgctgtacaagcactgtccatcatgcccaagagaccacaa
gctattctcactgcagtgtacgttgatcttttgcgtgggaacacgcaagaagctctcacc
aagttgaaactatgtagttctgttagattccttccaaccaaccttgcgatgactggttct
ttgtga
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