Ipomoea triloba (trilobed morning glory): 116032221
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Entry
116032221 CDS
T07384
Name
(RefSeq) WD-40 repeat-containing protein MSI2-like
KO
K10752
histone-binding protein RBBP4
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03082
ATP-dependent chromatin remodeling
itr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116032221
03083 Polycomb repressive complex
116032221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
itr03036
]
116032221
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
116032221
Histone modification proteins
HAT complexes
HATB complex
116032221
HDAC complexes
Sin3A-HDAC complex
116032221
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
116032221
PRC2.2
116032221
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
116032221
Heterochromatin formation proteins
Other heterochromatin formation proteins
116032221
Chromatin remodeling factors
NuRD complex
116032221
NuRF complex
116032221
NuRF complex (fruit fly)
116032221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_EIPR1
WDR55
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
EIF3I
WD_LRWD1
Beta-prop_EML
Beta-prop_WDR19_1st
MIOS_WD40
Beta-prop_HPS5
ANAPC4_WD40
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
DUF6922
Motif
Other DBs
NCBI-GeneID:
116032221
NCBI-ProteinID:
XP_031130557
LinkDB
All DBs
Position
10:complement(28970424..28973185)
Genome browser
AA seq
405 aa
AA seq
DB search
MGGGEMEATAGVEGVDEEFAVWKKNTPLLYDLVISHSLEWPSLTVQCLPSPPSHDGPFSV
HKLLLGTHTSDDCPNFLMLAQAYLPRNPASGLEHNLTEFQTPKVEIVQKILCDGEVNRAR
CMPQNTGLVAAKTNGCEVYVFDSANQHLNHDEGGSCDPYLRLRGHDKEGYGLSWSPFREG
SLLSASNDCKICLWNISATPNDKVLEADHIYKEHEDVVEDVSWHLKNENLFGSVGDDCRL
IIWDLRTNKPQHSVIVHEKEVNYLSFNPYNEWVLATASSDTTVGLFDMRKLSSPLHVLSS
HTDEVFQVEWDPNHETVLASSAGDRRLMVWDLNRIGDEQMEGEAEDGPSELLFSHGGHKA
KISDFSWNKNEPWVISSVAEDNSLQIWQMAESIYRDDEELQTDGS
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgggagggggagaaatggaggcgaccgccggagtcgaaggagtggatgaggagttcgcg
gtgtggaagaagaacacgccgttattgtacgacctcgtcatctctcattccctcgagtgg
ccttctctcaccgttcaatgccttccttctcctccatctcatgacggtcctttctccgta
cacaagctccttctgggaacccatacctctgacgattgccccaacttccttatgctcgct
caggcctaccttcctcggaaccctgcctctggcctagagcacaatctcactgaatttcaa
acccccaaggttgagatagtacaaaagatactctgtgatggggaagtgaatagggcaagg
tgtatgccgcagaacacaggtcttgttgcagctaaaactaatggctgtgaagtttacgtg
tttgacagtgccaaccagcatttgaatcatgatgaagggggatcttgtgacccttactta
agactgagaggtcatgacaaagaagggtatggcttgtcatggagcccattcagagagggg
agtcttttgagtgcctcaaatgattgcaaaatttgcttatggaatatatctgctacacct
aatgataaagtgcttgaagcagatcatatctataaggagcatgaagatgtagttgaggat
gtctcatggcatttaaagaatgaaaatctatttggatctgttggagatgattgccggcta
atcatttgggacttgcgcacaaataagcctcagcactctgttatagttcatgaaaaagag
gtgaattatttatcattcaatccatataatgagtgggtccttgccacggcatcttcagac
actacagttgggctgtttgacatgcgaaaattgagctctccattgcatgtcttaagtagt
catacggatgaagttttccaggtagaatgggatcctaaccatgaaacagtgttagcatct
tctgctggcgacagaaggttgatggtttgggaccttaataggatcggagatgagcaaatg
gagggagaagctgaagatggtccttctgagcttctcttctctcatggaggtcacaaggct
aagatatctgacttctcgtggaacaagaatgagccatgggtcatatcaagtgtagccgag
gacaattctcttcagatctggcaaatggctgagagcatatatcgtgatgatgaagaattg
cagacggatggatcttga
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