Ipomoea triloba (trilobed morning glory): 116032379
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Entry
116032379 CDS
T07384
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03022
Basal transcription factors
itr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116032379
09124 Replication and repair
03420 Nucleotide excision repair
116032379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116032379
03400 DNA repair and recombination proteins [BR:
itr03400
]
116032379
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
116032379
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116032379
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116032379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
116032379
NCBI-ProteinID:
XP_031130753
LinkDB
All DBs
Position
10:21723285..21735355
Genome browser
AA seq
765 aa
AA seq
DB search
MGHHGDKGRPSKKFKFSSKEEFRSAETDSYYPDEINDDPRDGEGEAKKRDFTKLELKPDH
GNRPLWACADGRIFLETFSALYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL
ETETIISVLSKLSKTKLPKEMIDFVHASTANYGKVKLVLKKNRYFIESPFPEVLKRLLQD
EVIGRSRLMSGGLHGSDGFTVSKSAGEIEGRHDELLNEAELAAAAEEKETHSFEIDPSQV
ENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARS
GIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSD
SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
ISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
MKLRKPMIYGATSHVERTKILEAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGS
RRQEAQRLGRILRAKGRLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
FKVITSLPPSDSGPELSYHRLDEQLSLLGKVLSAGDDAVGLEQLEEDTDDIALQKARRTM
GSMSAMSGAHGMVYMEYHNGKKVHGHKSKPKDPAKRHHLFKKRFG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgggtcatcacggtgataaaggtcgacccagcaaaaagttcaagttttcctcgaaggag
gaatttaggtctgctgaaacagattcgtattatccagatgaaatcaatgatgatcctcgt
gatggagagggtgaagcgaagaaaagagatttcacgaaacttgaactcaaacctgatcac
ggtaatcgccctttgtgggcttgtgctgatggtaggattttcctcgaaacattctcagca
ttatacaaacaggcatatgattttctcatagccattgctgaacctgtttgcaggccggag
tctatgcatgagtacaatttgacacctcactctttgtacgcggctgtgtccgttggtttg
gagactgaaactataatatctgttttaagcaaattgtcaaaaactaagcttccgaaagag
atgattgattttgtacatgcttctactgccaactatggcaaagtgaagcttgtgcttaag
aagaaccgctattttattgaatctccatttcctgaggtactgaaaaggttgcttcaagat
gaagttataggtcgatctagacttatgtctggggggcttcatggaagtgatggatttact
gtcagcaagtctgcgggtgaaatagaaggtagacatgatgagttgttaaatgaagcagag
ctggcagcagcagctgaagagaaagaaactcattcatttgaaattgatccttctcaggtt
gaaaatgtgaagcaacgttgcttgccaaatgccttgaattatcccatgttggaagaatat
gactttagaaatgatacggtcaatcctgatcttgatatggaattgaaacctcatgcacaa
ccacgaccttatcaagaaaagagtctcagtaagatgtttggaaatggtagggctagatca
ggtatcattgttctgccttgtggtgctgggaagtctttagtaggagtgtctgcagcatcc
agaattaaaaaaagctgtctttgtttagcaactaatgctgtctctgtggatcaatgggct
ttccagttcaagttatggtcaactattcgagaagaacagatatgccgtttcacatctgat
agcaaagaaaggttccgtggtaatgctggtgttgtggtgaccacatataatatggttgct
tttggtggaaaacgttctgaagaatctgaaaagatcattgaagaaataagaaacagagag
tggggtttgcttcttatggacgaggtccacgtggttccagcacacatgtttcgaaaggtt
atcagcattactaaatctcactgcaaacttggactcactgcaacacttgtcagagaggat
gaaagaatcacagatctcaactttcttattggccccaagttgtacgaggcaaattggttg
gacttagtgaagggaggatttattgcgaatgtgcagtgtgctgaggtttggtgtccaatg
acaaaggaattttttgctgaatatttgaagaaggagaactctaagaagaagcaggcactt
tatgtgatgaatccaaacaaattcagggcctgtgagtttcttatccggttccatgaacaa
cagcgtggggataagataattgtttttgctgacaatctatttgctctcaccgaatatgca
atgaagcttcggaaacctatgatctatggtgctacaagccatgtagaaagaacaaaaatt
cttgaggcatttaaaactagcaaggatgtgaacaccatattcctttctaaggtcggtgat
aattctatagatattcctgaagcaaatgttataatacaaatttcatctcatgctggttcg
agacgacaggaagcacaacgtcttgggcgtattcttagggcaaagggacgtcttcaagac
aggatggcaggaggtaaagaggagtataatgctttcttttactctcttgtatcaacagat
actcaggagatgtattattcaactaaaagacaacaattcttgattgatcaagggtatagc
ttcaaggtcatcacaagcttgccaccttctgattcaggacctgaattgagttaccatcgt
cttgatgagcaactttcgcttcttggaaaagtactaagtgcaggtgacgatgctgttggt
ttagagcaactggaagaagatacagatgatatagcccttcagaaagcccgtcgcaccatg
ggatctatgagcgcaatgtcaggagcacacgggatggtttatatggaataccataatgga
aagaaggtgcatgggcataagagcaaaccaaaagatccagccaagagacaccatttattc
aagaagcgttttggctga
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