Ips typographus (European spruce bark beetle): 145728065
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Entry
145728065 CDS
T11912
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ity
Ips typographus (European spruce bark beetle)
Pathway
ity03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ity00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
145728065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ity03041
]
145728065
Enzymes [BR:
ity01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
145728065
Spliceosome [BR:
ity03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
145728065
Complex B
145728065
Complex C
U2 SnRNP specific factors
145728065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
TmcA_N
Motif
Other DBs
NCBI-GeneID:
145728065
NCBI-ProteinID:
XP_081834164
LinkDB
All DBs
Position
LG1:complement(20929153..20957123)
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AA seq
758 aa
AA seq
DB search
MSGFNYSNFNSKKMNAVPPPSSLGSHTLSSKLNAVPPPSNLGSASRNSAVPPPSIGLSKQ
GYSTMTAISQNAITASWGTGSRKRAVTEDEYFDVEDEEQVPDLAYIPAPDSPTRLESKEK
QQEDDDEDDPLDAFMAGIEAQVQKETKKFEPSNASSYTQPVAEQQTQQQAIRDDLEAEDD
EESYYRYMEENPNAGLLPVEEDGIEIEYDEDGNPIAPDKKRIIDPLPPIDHSVIEYQPFQ
KNFYIEHPEIKMLAKDKVAELRSTYDLRVSGSDAPKPVAAFAHFGFDDKLLKAIIKAEYS
SPTPIQAQAVPAAIMGRDVLGIAQTGSGKTAAFLWPLLKHVSVQKPVEEGEGPIALILAP
TRELALQIYTEAKKFARIYDLRVICAYGGGSKWEQSKALKEGAEIVVATPGRIIDHVKGG
GTNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQTLLFSATFKKKIERLAKDALT
DPIRISQGVTGQANEDVTQHVLLLPSQDAKRDWLFGRLVELLSAGSVLIFVTKKLDAEKV
ANDLLVKEFDCLLLHGDMEQAERNKVITAFKKQDVPLLVATDVAARGLDIPHVRTVVNYD
IARDIDTHTHRIGRTGRAGTHGTAYTLLTYKDKEFAGHIVKNVEAAKQEVPQDVLDLALQ
SSWFKKQRFKRADQSPNVGGIGLGFKDKASSMRGFVASSSGNLSTTNSPAPAPAAKGPAT
DRLSAMKEAFKAQYINQFTASEENPPPVQSRRKRSRWQ
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgagtggctttaactactccaactttaacagcaaaaaaatgaacgctgttccaccccct
agtagtttgggaagtcatactttgagcagtaaactcaatgctgtgccacctccaagcaac
ttgggttctgcaagtaggaatagtgctgttcctcctccatctatcggcttaagtaagcaa
ggctactccacaatgactgccattagccaaaatgcaatcactgcttcttggggcactggt
agtcggaaaagagctgttacagaagatgaatactttgacgtagaagatgaagagcaggtt
ccagatctggcttatattcctgctccagacagtccaacaagattggagtccaaagaaaag
caacaagaagatgatgacgaagatgaccctttagatgcatttatggctggtattgaagcg
caggtgcagaaggagacaaaaaaatttgaaccatctaatgcttcttcatatactcaacca
gtagcagaacaacaaacccaacaacaagcaataagggacgatttggaggcagaagatgat
gaagaatcctactacaggtatatggaagaaaatcccaatgctggattgcttcctgttgaa
gaagatggtatagaaatagaatacgacgaagatggcaatccgatagctcctgacaagaaa
cggataattgatccacttccgccaatagatcactcagtaattgagtaccaaccttttcag
aaaaacttttacattgaacatcccgaaattaagatgttagcaaaagataaggttgcagag
ttacggagcacttatgacttacgagtcagcggtagtgacgctcccaaaccagtagctgcg
tttgcccatttcggtttcgacgacaagttattgaaggctattattaaagcagagtattca
tccccaactcctattcaagctcaagctgtcccagcggctataatgggtcgagatgtattg
ggtatagcacaaacaggaagtggtaaaactgcagcatttctctggcctctattaaagcac
gtgtcagtgcaaaaaccagtggaagagggcgaaggaccaatcgcgctaattctagctcca
acccgagagttggcgttacaaatttatactgaagcaaagaagtttgcgcgaatatacgat
ttaagagtcatttgcgcgtatggtggaggatcaaagtgggagcaaagcaaggctttgaaa
gagggtgcggaaattgtggttgccactcctggtcgaatcatagatcacgtaaagggcgga
ggcacaaacctacaaagagtaacgttcttggtattggacgaagctgacagaatgtttgaa
ttaggttttgagccgcaagttcgatcagtttgcaatcacgtacgacctgatagacaaaca
ctactgttctcagcaacatttaagaaaaaaattgaaaggttggccaaagatgctttaaca
gatcctataagaatatcgcaaggtgttactggacaagctaatgaagatgtaacgcaacat
gttttgctgctgccttcacaagatgccaagcgagactggttgtttggaaggctggtcgaa
ttactctctgctggttcggttttgatttttgtgacaaaaaaactggacgctgaaaaggtg
gctaacgatctcttggttaaggaatttgactgtttgttgcttcatggtgatatggaacag
gctgaaaggaataaagtaattacggctttcaaaaagcaggatgttcctttattggtagca
actgatgtagcagcgagaggtttggatattccacacgttcgcacagtcgtaaattacgat
atagctagagatattgatacgcacactcatagaattggtagaacgggacgtgccggtacc
cacggtacggcatacaccttgcttacctacaaagacaaggaatttgctggtcatatagta
aaaaatgtagaggccgcaaaacaggaagtacctcaggacgtactggatttagccttacaa
agttcatggtttaagaaacaaagatttaagagagcggatcaatcaccaaatgttggagga
attgggttaggttttaaagacaaggcttcttccatgagaggatttgtggctagttcgtca
ggaaacctttcaacaacaaacagtccggcacctgctcccgctgctaaaggtcctgcaact
gacagattatctgcaatgaaagaagcgtttaaggcgcagtatataaatcaatttactgca
agtgaagagaatcccccaccagtacaatccagaagaaaaaggagtagatggcagtaa
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