Ips typographus (European spruce bark beetle): 145729919
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Entry
145729919 CDS
T11912
Symbol
tst
Name
(RefSeq) superkiller complex helicase subunit twister isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ity Ips typographus (European spruce bark beetle)
Pathway
ity03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ity00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
145729919 (tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ity03019
]
145729919 (tst)
Enzymes [BR:
ity01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
145729919 (tst)
Messenger RNA biogenesis [BR:
ity03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
145729919 (tst)
mRNA degradation factors
3'-5' decay
Ski complex
145729919 (tst)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
145729919
NCBI-ProteinID:
XP_081837011
LinkDB
All DBs
Position
LG5:8304827..8312379
Genome browser
AA seq
1214 aa
AA seq
DB search
MSDFELPPLFPDIRDQLENYLLRPENLPIHKYERNQQFWGREPDPLELLDYDGAPVSTTL
RVQRDLDSGEIVEFREVPVDSVGVTARNSMSMSRAPLPPGDFVRGSASYIPFQPGSFPEP
VLDLPKLNLLKDDSDLLRVAPGFTHGLTFDQDGHTVICDEDVPSATINTQQENVVNLLEL
IQQEQDILGDLIQVNQPTQEQQQEVPLLAEEEEVLPKEPQVLTLSSLSALNPRNSSEWAI
LLDPNKPVLDFEKNIPNMAKKFPFELDNFQKLAIMKLEEHNHVFVAAHTSAGKTVVAEYA
IALSQKHMTRTIYTSPIKALSNQKYRDFKEEFEDVGLITGDFQINQKASCLIMTTEILRS
MLYCGSDITRDIEYVIFDEVHYVNDRDRGHIWEQVLIMLPKDVCVVLLSATVPNTVEFAD
WLGRTHKRKVYVITTTKRPVPLQHFLYTGRWGGSRHNKFLLLDAEKWINEGWTSATNDRI
ENCYKLVFRYIKATAAIEPCRNQNVKFLNKQQEKTLWSGLVDHLEKFELLPVVVFIFSRQ
RCDNNAEMLSHLNLTTQQEKSHIEYFFNKCIRSLKEPDRVIPQIVKMKEILSRGIGVHHS
GVLPIVKEIVEMLFQRGLIKILFATETFAMGVNMPARTVIFDSIRKHDGIEMRNLLPAEY
IQMAGRAGRRGKDEKGTVLLLCKLAVPPETELRNMMTGKPNKLVSQFRLTYGMVLSLLRV
ESLTVELMISKSFGEADHQKNVADLESELRKIQTDLEEICKQQLSGYLLPLVKFYECASS
YLRQRNEVLPQVMAFSKVQKLLIPGGLVLVTQKGHVNKLALILSKKTAGFRVLVLCNPQN
DPEQLERNDLWWQMLGLAREKMFAPSGSPGHTVLTVTASDIFEISAKSVKLDLKLVEADW
DKRQQDRFKFDPPGQTCAQAVHELLKLTVKANETNKAALEFQHFISDLKVNEQNLYHALK
DMYVIKDRMLDHLPSTRIPNFEEQFAAVFERKFLEEKKSNLEFRLSNASLTLYPDYRKRI
ELLQKLGYVDANNTVKLKGNVACEMGMNELLITELVVDDIFTELQPAEVAALLSSLVFRA
KTRNDSTDYEEELTPKLKEGIQLIKDVHARIGNLELELGIQTEEFQTDLNFGLVHVVYRW
ANSEPFAEIMKLTDVQEGIIVRCIQQLNETIMDVRDAAKIIGNPALKTKMEEASVAIKRD
IVFAESLYTQDEKF
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattttgagctgcccccgctttttccagatatcagggaccaactggagaactac
ctgctcaggcctgaaaaccttccaattcacaagtacgaaaggaaccagcagttttggggc
cgggagcccgaccccctagaactcctggattacgatggagcccccgtttccaccacgtta
agagtgcaacgtgatttggatagtggggaaattgtggagtttagagaagtgccagtagat
tcggtgggagttactgcgcgcaattccatgtcgatgagtcgagcccccttgcctcccggc
gattttgtacgaggcagcgcctcatatatcccttttcagccaggcagttttccagaacct
gtcctggatttaccaaaattaaatctacttaaagatgactcagatttgcttagggtagca
ccaggtttcactcatggtctaacatttgaccaagatgggcacacagtaatttgtgatgaa
gatgttccaagtgccactataaacacccagcaagaaaatgtggtcaaccttttagagtta
atacagcaggaacaagatattttaggagatttaatccaagtaaaccaaccaacgcaagag
caacaacaagaagttccacttttagctgaggaagaggaagtgttgcctaaagaacctcaa
gtcctaacactttcttctctatcagctttaaatccacgaaatagtagtgaatgggctatt
ttgctggatcctaataagccagtgctagactttgaaaagaacattcccaacatggccaaa
aagttcccttttgaacttgataattttcaaaaattggctataatgaaacttgaggagcac
aatcatgtgtttgtggctgctcatacctctgccggtaaaactgttgtagctgaatatgct
attgctttgtcacagaaacatatgaccagaactatttatacttcacccattaaagcactg
tcaaatcaaaaatatagggattttaaggaagaattcgaggatgtgggtttaattactgga
gacttccaaatcaatcaaaaagcatcctgtttgattatgaccaccgaaattttacggtca
atgttgtattgcggcagtgacatcactcgtgatattgaatatgtgatttttgacgaggtt
cattacgttaacgaccgagacagaggccacatctgggagcaagtgctgataatgctgcct
aaagatgtgtgcgtggtactactcagcgctacagtacccaacactgtggagtttgcagat
tggcttggtagaacccacaaaaggaaagtttacgtgattaccaccacaaaacgtccggta
cccttacaacactttctctacactggtagatggggtggtagtcgtcacaacaagttttta
cttctggacgcggaaaaatggatcaacgaagggtggacaagtgcaactaatgacagaatt
gaaaattgttacaaactggtttttaggtacataaaagccactgcggccattgaaccgtgc
cgcaaccagaacgtcaaattcctgaacaaacagcaggaaaaaacgttgtggagcggcctc
gtcgatcatttggaaaagttcgagctgttgccggtggtggttttcatattttcgcggcaa
agatgcgacaataacgccgaaatgttgtcccacttgaatttgaccacacaacaggaaaag
tcgcatattgagtatttttttaataaatgcatacggtcattaaaagaacccgatcgtgtg
attccccaaatagtaaaaatgaaagagatcttaagcagaggtattggagtgcatcacagt
ggcgtactgccaatagtgaaggaaatagttgaaatgctcttccagcgcggtttaatcaag
attctgttcgctactgaaacttttgcaatgggcgttaacatgcccgccagaactgtcata
ttcgattcaattaggaaacacgacggtatcgaaatgcggaatttactgcctgctgaatac
atccaaatggctggtagggcgggtcggcgtggcaaagacgaaaaaggtaccgttttgttg
ttgtgtaaactggccgtgccaccggaaacggagctgcgcaacatgatgaccggcaaaccg
aacaagttggtgagccaatttcggctcacttacggtatggtgctcagtttgttgcgcgtc
gaaagtctcaccgttgaattgatgatttccaagagtttcggcgaagccgatcatcaaaaa
aacgtggccgatttggagtccgaactgcgtaaaatccaaactgacttagaggaaatctgt
aaacaacagcttagcggttatttgctacctttggtcaagttttacgagtgtgcaagctcg
tacttgcgacagagaaacgaagttttgccgcaagtaatggcgttttccaaggtgcaaaaa
ctgctaatacctggaggactggtgttagtaacgcaaaagggtcacgtcaacaaactggct
ttgattctgtccaagaaaactgcaggattccgcgttctggtgctgtgcaacccacaaaac
gatccggaacaactcgaacgcaacgatttgtggtggcaaatgttgggtttggctagggaa
aagatgtttgcgccctccggttccccaggccatactgttctaaccgtgaccgctagcgac
atctttgaaatatccgctaaaagcgtgaaactagacctgaaactggtggaagcagattgg
gacaaacgtcaacaggaccgattcaagtttgacccgcccggtcagacttgcgcccaagcg
gtccacgagctgctcaagttaactgttaaagccaacgagactaataaagcggctttggag
tttcaacactttatcagcgatctcaaagtcaacgagcaaaatttgtatcacgctcttaaa
gacatgtacgtaattaaagacagaatgctggaccatttacccagcactcgtatacccaac
tttgaagaacagtttgctgctgtgtttgaacggaaatttttggaagaaaagaaaagcaac
ttggagttccgtctgtcaaacgccagtctcactttgtaccccgactatcggaaaagaatt
gaactactacaaaaattgggttatgtggatgcaaacaacactgtgaaattaaagggtaac
gtggcttgtgaaatgggtatgaacgaactacttataacggaactggtggttgatgacatt
ttcaccgagttgcaaccggctgaagtggcagccctgctgtcctctctggtattcagagca
aagacccgaaacgactccaccgactacgaagaagaactcactcctaaacttaaagaaggc
atacaattaatcaaagatgtgcacgcgagaattggcaacctcgaactagaactaggaata
caaactgaagaattccagaccgacttgaatttcggactggttcacgtggtctacagatgg
gcaaactctgagccgttcgctgaaataatgaagctcacagacgtccaagagggaataatc
gtaaggtgtatacaacagctgaacgaaaccattatggacgtgcgtgacgcggccaaaatt
atcggcaaccccgcgttaaaaaccaaaatggaggaagcgtcagtcgctattaaacgtgac
atagtgtttgccgaaagtttgtacacgcaagatgagaaattttga
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