KEGG   Ips typographus (European spruce bark beetle): 145733419
Entry
145733419         CDS       T11912                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ity  Ips typographus (European spruce bark beetle)
Pathway
ity03018  RNA degradation
ity03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ity00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    145733419
  09123 Folding, sorting and degradation
   03018 RNA degradation
    145733419
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ity03019]
    145733419
   03041 Spliceosome [BR:ity03041]
    145733419
Messenger RNA biogenesis [BR:ity03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     145733419
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     145733419
Spliceosome [BR:ity03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    145733419
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 145733419
NCBI-ProteinID: XP_081842358
LinkDB
Position
LG9:complement(9041702..9042549)
AA seq 136 aa
MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEVIDMVKEETLVKNKQAREQKGGRGMQNQRNRPAARGNFAGGRPNKP
PGQTKLFQKNKAPKPS
NT seq 411 nt   +upstreamnt  +downstreamnt
atgctgcccctttccttgctcagaacagcccaaaatcatcccatgttggtggaattaaaa
aatggcgaaacctacaatgggcacttggtgagttgcgacaactggatgaacatcaacttg
cgcgaagtaatttgcacgtccagggacggtgataagttctggagaatgcccgaatgctac
attcggggtagcaccatcaaatacttgagaatccctgatgaagtcattgacatggtgaag
gaagaaactttggttaagaacaaacaggctagagaacaaaagggtggtagaggtatgcag
aaccaaagaaatcggccggctgctcgtggcaactttgctggtggcaggcccaacaaaccc
ccaggacaaacaaaactgtttcagaaaaataaagctccaaaaccttcataa

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