Ips typographus (European spruce bark beetle): 145736414
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Entry
145736414 CDS
T11912
Symbol
pit
Name
(RefSeq) putative ATP-dependent RNA helicase pitchoune
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
ity Ips typographus (European spruce bark beetle)
Brite
KEGG Orthology (KO) [BR:
ity00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ity03041
]
145736414 (pit)
03009 Ribosome biogenesis [BR:
ity03009
]
145736414 (pit)
Enzymes [BR:
ity01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
145736414 (pit)
Spliceosome [BR:
ity03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
145736414 (pit)
Ribosome biogenesis [BR:
ity03009
]
Eukaryotic type
90S particles
Helicases
145736414 (pit)
Pre-60S particles
145736414 (pit)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
SecA_DEAD
AAA_30
DUF8305
Peptidase_M78
AAA_22
Motif
Other DBs
NCBI-GeneID:
145736414
NCBI-ProteinID:
XP_081846981
LinkDB
All DBs
Position
LG12:complement(1577793..1581052)
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AA seq
626 aa
AA seq
DB search
MSMQDKVLMRKIKKREKQKLRLIQLKEAEKQAVQVKEKEDQPRLVEKRQGVKRSQDSAAE
VSKKKKKNKKSKKLEEEEDDSQSDNEGSPKDKDTSVEIDNPEQLEESSKLQLPGSRAGLQ
ILSDKTFESLKDVVCENTLKAIVDMGFTTMTEIQARSVPPLLEGRDLVGAAKTGSGKTLA
FLIPAVELVYKLKFMPRNGTGVIIISPTRELSMQTFGVLKELMKYHHHTYGLIMGGASRQ
TEAQKLSKGINILVATPGRLLDHLQNTPDFLYKNLQCLIIDEADRILDIGFEEEMKQIIN
LLPKRRQTMLFSATQSKKTEALTSLALKKEPVYVGVDDTKTEATVDGLEQGYVVCPSEKR
LLVLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVMSIHGKQKQTKRTTTFFQFC
NAESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRP
EELGFLWYLKQAKVPLNEFEFSWSKIADIQLQLENLIGRNYYLNMSAKEAFKAYVRAYDS
HHLKNIFDISTLDLAKVGQSFGFKVPPAVDLKISAKKSERPEKKRKGGGGFGYFKNMNSM
NDKSVRKNTVYRTPKNKGGERRQFAR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgcaagataaagtgttgatgcgcaaaataaagaaacgggagaaacaaaaactc
aggctaattcagctgaaagaagccgagaaacaagcagtccaagtcaaggagaaggaagat
cagccccgacttgttgagaagcggcagggtgttaagcgttcacaggattccgctgctgaa
gtctcaaaaaagaaaaagaagaacaagaaatctaaaaaattagaggaagaagaggatgac
tcacaaagtgacaatgaagggtcacctaaagacaaagatacgtcagttgagattgacaac
ccagaacaactagaggaatcatcaaaactgcagttgccaggttcgcgagcaggcctgcaa
attctgagcgacaaaacatttgaatcgcttaaagatgtggtttgcgaaaatacgttaaaa
gccatcgtcgatatgggctttacgaccatgacggaaattcaggcgcgtagcgtgccccct
ctgttggaaggacgcgatttagtgggtgcggccaaaactggctccgggaaaacccttgcg
tttctcatacctgctgtggaattggtttacaaattgaagttcatgcctagaaacgggact
ggcgttattataatatcacctacgcgtgaattgtcaatgcaaacgtttggggtattgaaa
gaactaatgaaatatcaccatcacacttacggccttattatgggcggggcgagtcggcaa
actgaagcacaaaagttatccaaagggattaacatacttgtagcaactccgggaaggttg
ctggaccatcttcagaatactccagactttttgtataaaaaccttcagtgtttgataatt
gacgaggcggaccgaattttggatatcggattcgaagaagagatgaaacaaattataaac
ttgcttccaaaacgacgacaaacaatgttgttcagcgctacgcagagcaaaaaaactgaa
gcgttgacgtcactcgctttgaagaaagaaccggtgtatgtgggagtggacgatacaaaa
accgaagccaccgttgacggtctggaacagggttacgtggtttgcccctctgaaaaacgt
cttctcgtactgtttacattcctcaaaaagaaccgaaagaagaaggttatggtgttcttc
agttcgtgtatgtcggttaagtatcatcacgaacttttcaactacatcgatttaccggtg
atgtcaattcacggcaaacaaaaacaaaccaaacggactacaacgttcttccaattttgt
aatgcggagtctggtattttattgtgtacggatgtagctgccagaggtttggatattcct
gcagttgactggattgtacagtatgatcctccagatgacccaaaagaatacattcaccga
gtaggacgaacggctagaggagaaggtagcagtggacatgctttattaattcttcgtccg
gaagaattagggtttttgtggtaccttaaacaagccaaagttcctctaaacgagtttgag
tttagttggagcaaaatagctgatattcagttgcagctcgaaaatttgattggtagaaat
tactacctcaacatgtcagctaaagaggctttcaaggcttacgtcagagcgtacgattcg
catcatctgaagaatattttcgatatttccacgttggatttggccaaagtgggacagtcg
tttgggtttaaagtgcccccggctgtcgatttgaaaatatccgcaaaaaaaagtgaacgt
cccgaaaagaaacgcaaaggcggtggcggttttggatattttaagaacatgaattcaatg
aacgacaaatcagtcagaaaaaatacggtctatagaacacctaaaaataaaggtggagaa
aggaggcagtttgcgcgatga
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