Isoptericola variabilis: Isova_0026
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Entry
Isova_0026 CDS
T01520
Name
(GenBank) Pectate lyase/Amb allergen
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
iva
Isoptericola variabilis
Pathway
iva00040
Pentose and glucuronate interconversions
iva01100
Metabolic pathways
iva02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Isova_0026
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Isova_0026
Enzymes [BR:
iva01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Isova_0026
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
F5_F8_type_C
Trypan_PARP
Motif
Other DBs
NCBI-ProteinID:
AEG42844
UniProt:
F6FQ91
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Position
29381..30928
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AA seq
515 aa
AA seq
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MRRPSALRLLAAGAGLALTASVGVTALAAQDAQAATGSATGFASANGGTTGGAGGQTVRA
TSGTEIHAALCNRPTSSTPIVIEVEGTITHAGTSKVSGASCNTADGVIELKQISNVTLVG
VGAGAVFDQVGIHIREASNIIIQNVTVRNVKKSGSPISNGGDAIGMESGVRNVWVDHVTL
EASGGEAEGYDGLFDMKNDTQYVTLSYSILRNSGRGGLVGSSESDLSNGFVTFHHNRYEN
IDSRTPLLRGGIAHAYNNHYVRINESGINSRAGARIKVENNYFKDSKDVLGTFYTDQAGY
WEVAGNVFDNVRWSSSSSTYNPAGPNPTSTTSVSIPYAYGLDPASCVPDVVTRTAGANTG
LLVSDGTCSPQDPTPTPTPTPDPTPEPTPEPTPTGVNLSIGAGSDGSSKADGTSYGNVRD
GDLSTYWSPAGSTGRISIKWGSPTTVSTVVIREAAGAVGAIGSWRVVNNDDGRVLATGSG
AGTIRFAATTLSKINVEITSSSATPRVAELETYAG
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgagacgaccatctgcgctccgactcctcgcggccggggccggcctggccctgaccgcc
tcggtcggcgtcaccgccctcgctgcccaggacgcccaggcggcgaccggctccgcgacg
ggcttcgcatccgccaacggcggtaccaccggcggcgccggcgggcagaccgtccgggcg
acgtcgggcaccgagatccacgcggccctgtgcaaccggccgaccagcagcacgccgatc
gtcatcgaggtcgagggcaccatcacccacgccggcaccagcaaggtctccggcgccagc
tgcaacaccgccgacggcgtcatcgagctcaagcagatcagcaacgtcacgctcgtcggc
gtcggtgcaggcgccgtcttcgaccaggtggggatccacatccgcgaggcgagcaacatc
atcatccagaacgtgaccgtgcggaacgtcaagaagtcgggttccccgatctccaacggc
ggcgacgcgatcggcatggagagcggcgtacgcaacgtctgggtcgaccacgtgacgctg
gaggcctccggcggcgaggcggagggctacgacggcctcttcgacatgaagaacgacacg
cagtacgtgacgctctcgtacagcatcctgcggaactcgggccgcggcgggctcgtcgga
tccagcgagtcggacctctcgaacggcttcgtgacgttccaccacaaccggtacgagaac
atcgactcccgcactcccctgctgcgcggtggcatcgcgcacgcgtacaacaaccactac
gtgcggatcaacgagtcgggcatcaactcgcgcgccggcgcccggatcaaggtcgagaac
aactacttcaaggactccaaggacgtcctcgggaccttctacaccgaccaggccggctac
tgggaggtcgccgggaacgtcttcgacaacgtccggtggtcgtccagcagcagcacgtac
aaccccgccgggccgaacccgacgtcgaccacgtcggtgagcatcccgtacgcgtacggg
ctcgacccggcgagctgcgtgcccgacgtcgtcacgcgcacggccggcgcgaacacgggg
ctgctcgtctccgacgggacctgctcaccgcaggacccgacgccgacgccgacgcctacg
cccgacccgacgccggagccaaccccggaacccacgcccaccggggtgaacctcagcatc
ggtgcgggctcggacggctcgagcaaggccgacggcacgagctacggcaacgtgcgcgac
ggcgacctgagcacctactggtctccggccggctcgacgggccgcatctcgatcaagtgg
ggatcgccgaccacggtgtcgaccgtcgtgatccgggaggccgccggggccgtgggggcc
atcggctcgtggcgcgtcgtcaacaacgacgacggccgggtcctggcgaccggcagcggc
gccgggaccatccgcttcgcggccacgacgctgagcaagatcaacgtcgagatcacgagc
tcgagcgccacgccacgcgtcgcggagctcgagacgtacgccggctga
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