Isoptericola variabilis: Isova_0108
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Entry
Isova_0108 CDS
T01520
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
iva
Isoptericola variabilis
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iva03019
]
Isova_0108
Enzymes [BR:
iva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Isova_0108
Messenger RNA biogenesis [BR:
iva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Isova_0108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
NACHT
nSTAND3
AAA_30
T2SSE
ABC_tran
SLFN-g3_helicase
PhoH
SRP54
Zeta_toxin
TsaE
ResIII
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEG42922
UniProt:
F6FQV7
LinkDB
All DBs
Position
complement(116278..120567)
Genome browser
AA seq
1429 aa
AA seq
DB search
MSAAQLERAAQARAAVVVPPITYPEQLPVSARRADIARAIRENQVVVVAGETGSGKTTQL
PKIALELGRGRAGQIGHTQPRRIAARSVAERIAEELGTELGGVIGYQVRFTDESSEDTLV
KVMTDGILLAQIQRDPELRAYDTLIIDEAHERSLNIDFLLGYLSRLLPRRPDLKLIITSA
TIDSERFAAHFSPAHLAEIGGAPEAVVDVLPDHAPVVEVSGRTYPVEIRYRPLSPDTDPD
APAKKKGEEKDLVTGIVEACDELMAEGPGDILVFLSGEREIHDAADALEGHLGERVRDPK
RPDHVEILPLYSRLSAAEQHRVFQSHPGRRIVLSTNVAETSLTVPGIHYVVDPGTARISR
YSKQTKVQRLPIEPISQASANQRSGRSGRVADGIAIRLYSQEDFERRPEYTEPEILRTSL
ASVLLQMISVGVVESPDDVARFPFVEKPDTRAVRDGVQLLTELGALETEDGRTRLTDVGR
TLAQLPMDPRLARMIIEGSRLGVAREVAIIAAALSIQDPRERPAEERAQADQQHARFTDP
RSDFLTYLNLWEYVRAQQHAMGSSAFRRMCKAEHLNFLRIREWQDVVAQLREMAKPLGID
MSFRPSARSGDLSGPGRGMDQPEPDSSEKYTLEWDGDTIHRALLAGLLSQIGMQDTGEIK
ASSVAHLRGEARARALRQAAKRARNEYLGARGARFAIFPGSPLSKKPPAWIMAGELVETS
RLWARDVARIEPEWAEELAAHLVKRTYSDPHWSSKQGAAMATEKVLLYGIPIVSDRKVLY
AKVDPEAAREMFVRHALVEGQWTTHHRFFAENRRLLAEAEELEARSRRRGLVASEDDLFA
FYDERVPASVVSARHFDRWWKTAQRENPDLLTFTLDQLVDTSAVDTSEFPEAWTQGEVTL
PLTYQFQPGTDADGVTVHIPLSILNRVVPDGFDWMVPGLLEELCVATIRSLPKAVRRELV
PAPDVGAAVARWLRENTPSWEDMTRAGDMASPFHVEFSRAVRALRDVVIPDDVWDAERVE
RLPAHLRMTFRVEERRGAKTVVVDESKDLVALQKRLAAKAEAAVRAAVKGAVGVALEEAR
SRAASPAPARPGQPGRPSDAASSASSSGSPSAVVAERSNLSSWPADLPDGRLPDAVSTDL
GGGVVVRGYPAVVEEEDAKGQPTVALRVLADAAERDARHAAGVRRLLLAQTGLQSGRITS
RWTAKQSLTLAAAPYRNTDALVADLQLAAVTALTSPDAEKAPGTPTGGPVAVQIRDADSY
DDAKAFVRQHLEDEIYRVVGHVVAALSAWRTIEGEVRSSSSLALLNTLQDIRDHVATLVH
DGFVSATPPRRLPHLVRYLRAASYRLEKAQASPHRDAELAWRVHDVTEAYDKARAAYAAG
PADPARAAELAEVRWLIEELRVSLFAQQLGTDGPVSEKRIRKILTPSGW
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgccgcccagctcgagcgcgccgcgcaggcacgtgccgccgtcgtcgtgccgccc
atcacgtaccccgagcagctgccggtctcggcgcggcgcgcggacatcgcgcgcgcgatc
cgcgagaaccaggtggtcgtcgtcgcgggcgagacgggctcggggaagacgacgcagctg
ccgaagatcgcgctcgagctgggccgcgggcgcgcggggcagatcgggcacacccagcca
cggcgcatcgcggcccgctccgtggccgagcgcatcgccgaagaactcgggacggagctg
ggcggcgtcatcgggtaccaggtgcggttcaccgacgagtcgagcgaggacacgctcgtc
aaggtcatgaccgacggcatcctgctcgcgcagatccagcgcgacccggagctgcgcgcg
tacgacacgctcatcatcgacgaggcgcacgagcggtcgctcaacatcgacttcctgctg
ggctacctgtcccgcctgctgccgcgccggccggacctcaagctcatcatcacgtcggcg
acgatcgactccgagcggttcgcggcgcacttctcccccgctcacctcgccgagatcggc
ggggcgcccgaggcggtcgtcgacgtgctgcccgaccacgcaccggtggtggaggtctcg
ggccggacgtaccccgtcgagatccggtaccgcccgctgtccccggacaccgacccggac
gcgcccgcgaagaagaagggcgaggagaaggacctcgtcaccggcatcgtcgaggcgtgc
gacgagctcatggccgaggggccgggcgacatcctcgtgttcctctcgggcgagcgcgag
atccacgacgccgccgacgcgctcgagggccacctcggcgagcgcgtgcgcgaccccaag
cgtcccgaccacgtcgagatcctgccgctgtactcgcggctgtccgcggcggagcagcac
cgggtcttccagtcgcaccccggccggcgcatcgtgctgtcgaccaacgtcgccgagacg
tcgctgaccgtgcccggcatccactacgtcgtcgaccccggcaccgcgcgcatctcgcgc
tactccaagcagaccaaggtccagcggctgccgatcgagccgatctcgcaggcctcggcc
aaccagcgctccgggcggtccgggcgcgtggccgacggcatcgcgatccggctgtactcg
caggaggacttcgagcgccgccccgagtacaccgagccggagatcctgcgcacctcgctc
gcgtcggtgctgctgcagatgatctccgtcggcgtggtcgagtcgcccgacgacgtcgcg
cgcttcccgttcgtcgagaagcccgacacgcgggccgtgcgcgacggcgtgcagctgctc
accgagctcggcgcgctggagacggaggacggccggacgcggctgaccgacgtcgggcgc
acgctcgcgcagctgcccatggacccgcgcctggcgcgcatgatcatcgagggctcgcgg
ctcggcgtcgcgcgagaggtcgcgatcatcgccgccgcgctgtcgatccaggacccgcgc
gagcggcccgccgaggagcgcgcgcaggccgaccagcagcacgcccggttcaccgacccg
cggtccgacttcctcacgtacctcaacctgtgggagtacgtccgcgcgcagcagcacgcg
atgggctcgtccgcgttccggcgcatgtgcaaggcggagcacctcaacttcctgcgcatc
cgcgagtggcaggacgtcgtcgcgcagctgcgcgagatggccaagccgctgggcatcgac
atgtcgttccggccctcggcccgctctggcgacctgtcaggcccaggccggggtatggac
cagcctgagcctgacagctcggagaagtacacgctcgagtgggacggcgacacgatccac
cgcgcgctgctcgcggggctgctcagccagatcggcatgcaggacacgggcgagatcaag
gcgtcgtcggtcgcgcacctgcgcggcgaggcgcgcgcccgcgcgctgcgtcaggccgcc
aagcgggcgcgcaacgagtacctcggcgcccgcggggcgcggttcgcgatcttccccggc
tcgccgctgagcaagaagccgccggcctggatcatggcgggcgagctcgtcgagacgtcg
cgactgtgggcgcgcgacgtcgcgcgcatcgagcccgagtgggccgaggagctcgccgcg
cacctcgtcaagcgcacgtactccgacccgcactggtcgtccaagcagggcgcggccatg
gccacggagaaggtgctgctctacggcatccccatcgtgagcgaccgcaaggtcctctac
gcgaaggtcgaccccgaggccgcgcgcgagatgttcgtccggcacgcgctcgtcgagggc
cagtggacgacgcaccaccgcttcttcgcggagaaccgccgtctgctcgccgaggcggag
gagctcgaggcgcgctcgcgccggcgcgggctcgtcgcgtccgaggacgacctcttcgcg
ttctacgacgagcgcgtgccggcatcggtcgtcagcgcgcggcacttcgaccggtggtgg
aagacggcgcagcgcgagaatcccgacctgctcaccttcacgctcgaccagctcgtcgac
acctccgccgtcgacacgtccgagttccccgaggcgtggacgcagggcgaggtcacgctc
cccctcacctaccagttccagcccgggaccgacgccgacggcgtcaccgtccacatcccc
ctgtcgatcctcaaccgcgtcgtgcccgacgggttcgactggatggtccccggcctgctc
gaggagctctgcgtcgcgaccatccgctcgctgcccaaggccgtgcgtcgcgagctcgtg
cccgcgcccgacgtcggtgccgccgtcgcgcgctggctgcgggagaacacgccctcgtgg
gaggacatgacgcgcgcgggcgacatggcctcgcccttccacgtcgagttctcgcgcgcc
gtgcgggccctgcgcgacgtcgtcatccccgacgacgtgtgggacgccgagcgcgtcgag
cggctgcccgcgcacctgcgcatgacgttccgcgtcgaggagcggcggggtgccaagacc
gtcgtcgtcgacgagtcgaaggacctcgtggcgctgcagaagcggctggctgccaaggcc
gaggcggccgttcgggctgcggtcaagggtgctgtgggggttgctctcgaggaggctcgg
tcgcgtgcggcgagcccggctcccgccaggcccggccagcctggacgtccgtccgacgcc
gcctcgtcggcctcgtcgtccgggtcgccttccgccgtggtcgcggagcgttcgaacctc
tcctcctggcccgcggaccttccggacgggcggctgccggacgccgtgtcgaccgacctc
gggggcggggtcgtcgtgcgcggctacccggctgtcgtcgaggaggaggacgcgaagggg
cagcccacggtggcgctgcgggtgctggccgacgccgcggagcgggacgcgaggcatgcg
gcgggtgtgcggcggctgctgctcgcgcagaccggcctgcagagcgggcgcatcacgtcg
cggtggacggcgaagcagtcgctcacgctcgcggcggcgccgtaccggaacaccgacgcg
ctcgtcgcggacctgcagctggccgcggtcaccgcgctgaccagcccggacgccgagaag
gcgccgggcacgccgaccggcggacccgtcgccgtacagatccgggacgccgactcgtac
gacgacgcgaaggcgttcgtccgccagcacctggaggacgagatctaccgggtcgtcggg
cacgtcgtggccgccctgtcggcgtggcggacgatcgagggcgaggtgcgctcgtcgtcc
tcccttgccctgctcaacacgctgcaggacatccgcgaccacgtcgcgacgctcgtccac
gacgggttcgtctccgcgaccccgccccgccggctgccgcacctcgtgcgctacctgcgc
gcggcgtcgtaccggctcgagaaggcgcaggcgagcccccaccgggacgccgagctcgcg
tggcgcgtgcacgacgtgaccgaggcgtacgacaaggcgagggccgcgtacgcggccggg
ccggccgaccccgcgcgggcggccgagctcgccgaggtgcggtggctcatcgaggagctg
cgggtgtctctgttcgcgcaacagctcggcaccgacgggcccgtcagcgagaagaggatc
cggaagatactcaccccgtccgggtggtga
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