Isoptericola variabilis: Isova_0427
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Entry
Isova_0427 CDS
T01520
Name
(GenBank) DNA polymerase III, delta prime subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
iva
Isoptericola variabilis
Pathway
iva03030
DNA replication
iva03430
Mismatch repair
iva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Isova_0427
03430 Mismatch repair
Isova_0427
03440 Homologous recombination
Isova_0427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iva03032
]
Isova_0427
03400 DNA repair and recombination proteins [BR:
iva03400
]
Isova_0427
Enzymes [BR:
iva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Isova_0427
DNA replication proteins [BR:
iva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Isova_0427
DNA repair and recombination proteins [BR:
iva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Isova_0427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
AAA_16
nSTAND_NTPase5
Mg_chelatase
AAA_5
AAA_22
DNApol3-delta_C
AAA_18
Hmr1_E-cad-like
nSTAND3
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
AEG43224
UniProt:
F6FU28
LinkDB
All DBs
Position
451824..452960
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AA seq
378 aa
AA seq
DB search
MSVWDDVVGQPDAVRTLSRAATDPAAMTHAWLLTGPPGSGRSVAARAFAAALQCDQGGCG
ACHACTTTLAGTHPDLTVVATEKVVIQIEEVRELIGTASRTPSSGRFRVIVVEDADRMAE
RTTNVLLKAIEEPPPHTVWVLCAPSAQDVLPTIRSRCRGVVLRVPPAEAVAELVVRRDGV
DPHVALTAARAAQSHVGLARRLARDPAARERRAAVLEIARRIRGVPDAVLAAGELVDVAK
AEATAATAERDAAEKAELLRALGVGEGETLPPRLRSQLKQLEDDQKRRATRHQRDVLDRA
MVDLLSLYRDVLVVQLGADVDLVNTEQAATVRALAADSTPEQTVRRMDAIGVARERLEGN
VAPLLALEAMTIALRPQG
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgtgggacgacgtcgtcggccagccggacgccgtccgcaccctgagccgcgcg
gcgaccgacccggccgcgatgacgcacgcctggctcctcacgggcccgcccggctcgggc
cggtccgtcgccgcgcgcgcgttcgccgccgcgctgcagtgcgaccagggcggctgcggc
gcctgccacgcgtgcacgacgacgctcgcggggacgcaccccgacctcaccgtcgtggcg
accgagaaggtcgtcatccagatcgaggaggtgcgcgagctcatcggcaccgcgtcgcgc
accccgtcgtcgggccgcttccgcgtcatcgtcgtcgaggacgccgaccgcatggccgag
cgcaccaccaacgtgctgctcaaggcgatcgaggagccgccgccgcacaccgtgtgggtg
ctgtgcgcgccgagcgcccaggacgtgctgccgacgatccgctcgcgctgccgcggcgtc
gtgctgcgggtgccgcccgccgaggcggtcgccgagctcgtcgtgcggcgcgacggcgtc
gacccgcacgtcgcgctcacggccgcgcgcgccgcgcagagccacgtcggtctcgcgcgc
cggctcgcgcgcgaccccgccgcccgcgagcggcgcgcggcggtgctggagatcgcgcgg
cgcatccgcggggtgcccgacgccgtgctcgccgctggcgagctcgtcgacgtggccaag
gccgaggcgacggccgcgacggccgagcgcgacgccgccgagaaggccgagctcctgcgg
gccctcggggtcggtgagggcgagacgctcccgccgcgcctgcgctcgcagctcaagcag
ctcgaggacgaccagaagcgccgcgccacgcgccaccagcgcgacgtcctcgaccgggcg
atggtcgacctgctctcgctgtaccgggacgtgctcgtcgtccagctcggcgccgacgtc
gacctcgtcaacaccgagcaggccgccacggtgcgggccctggccgcggactcgacgccc
gagcagacggtgcgtcgcatggacgcgatcggcgtcgcgcgcgagcgcctcgaggggaac
gtcgcgccgctgctggcgctcgaggcgatgacgatcgcgctgcgcccgcaggggtga
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