Isoptericola variabilis: Isova_0651
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Entry
Isova_0651 CDS
T01520
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
iva
Isoptericola variabilis
Pathway
iva03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Isova_0651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iva03021
]
Isova_0651
03400 DNA repair and recombination proteins [BR:
iva03400
]
Isova_0651
Enzymes [BR:
iva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Isova_0651
Transcription machinery [BR:
iva03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Isova_0651
DNA repair and recombination proteins [BR:
iva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Isova_0651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LppC
Motif
Other DBs
NCBI-ProteinID:
AEG43438
UniProt:
F6FVV8
LinkDB
All DBs
Position
705174..709055
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDVNVFDELRIGLATADDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDEEARTEDLPNLQNEIDLEKKEIVDRRDNDINARATKLEQD
LAELEAEGAKADARRKVRDAAEREMAQIRKRADAELDRLEQVWDRFKNLKVADLEGDEML
YRQLVDRYGTYFEGHMGAQAIQKRLESFDLEAEAEALREIIRTGKGQRKTRALKRLKVVN
AFLTTTNSPTAMVLDVVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERTR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGLHHLTSERPGAKGEGR
VFSSQAEAIMAFDRGELDLNATIKVRMSDLVPPSHDFEAPEGWEQGQPILFETTLGRTIF
NEALPVDYPFQNEVVGKKELSAIVNDLAERYPKVDVATSLDALKDAGYRWATRSGVTIAI
SDVAMPEVKNEILDEHEQRALKVQSQFEKGLITDDERRQELIEIWTQATDKIAAVMRENL
ENNSRNTLYRMVSSGARGNWMQVRQIAGMRGLVANPKGEIIPRPIKSNYREGLSVLEYFI
ASHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLTLPVAERIGDTLVP
HPRVETSIYSRTFATDVVDGDGNVIAEAGSDAGDVVIGKVIEAGIENVKVRSVLTCESRV
GTCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASAEDITQGLPR
VTELFEARTPKGEAPIAEYTGTVTIEDTERTRHLVLTPDDGGEEIRYPVTKRARLLVADG
DHVQVGTQLVQGAVDPKKVLRILGPRAAQKHLVDEVQETYRSQGVDIHDKHIEVIVRQML
RRVTVLDSGDTDLLPGELAERTRFEDANRKAVAEGGQPASGRPELMGITKASLATDSWLS
AASFQETTRVLTEAAMSGRRDPLLGLKENVIIGKLIPAGTGLARYRNIEVEPTEQAKAEL
YPSFGYDEIDFPTLGMGSGEAIPLEDLDFGDFR
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacgtcttcgacgagctgcgcatcggcctggcaacggccgacgacatc
cgtgcctggtcgcacggtgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtg
gaggtcacgcgctccaaggtgcgccgtgagcgcatgggccacatcgagctcgccgccccc
gtgacgcacatctggttcttcaagggtgtgccgtcgcgcctgggctacctgctcgacctg
gcgcccaaggatctggagaaggtcatctacttcgcggcctacatgatcacgtgggtcgac
gaggaggcgcgcaccgaggacctccccaacctccagaacgagatcgacctggagaagaag
gagatcgtcgatcgccgcgacaacgacatcaacgcccgcgccacgaagctcgagcaggac
ctcgccgagctcgaggccgagggtgccaaggccgacgcgcgccgcaaggtgcgcgacgcg
gccgagcgcgagatggcgcagatccgcaagcgtgccgacgccgagctcgaccgcctcgag
caggtgtgggaccggttcaagaacctcaaggtcgccgacctcgagggtgacgagatgctg
taccgccagctcgtcgaccgttacggcacctacttcgagggccacatgggcgcgcaggcg
atccagaagcgcctcgagagcttcgacctggaggccgaggccgaggcgctgcgcgagatc
atccgcacgggcaagggccagcgcaagacccgcgcgctcaagcgcctcaaggtcgtcaac
gcgttcctgacgacgaccaactcgcccacggcgatggtgctcgacgtcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgacgtcggacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcggctgctcgacctg
ggcgcgccggagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgactcg
ctgttcgacaacggccgccgcggccggcccgtcacgggcccgggcaaccgcccgctcaag
tcgatctccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccaa
tgcggcctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatgaagcggctc
gtcgatctcaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgcacccgc
cccgtcgtgtgggacgtgctcgaggaggtcatcaccgagcacccggtgctgctcaaccgt
gcgccgacgctccaccgcctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccacctgcacccgctcgtgtgcgccgcgttcaacgcggacttcgacggcgaccag
atggccgtgcacctgccgctgagcgccgaggcgcaggccgaggcccgcatcctcatgctc
tcgagcaacaacatcctcaagccgtcggacggccgtccggtgaccatgccctcgcaggac
atgatcatcggcctgcaccacctgacgtcggagcgcccgggcgccaagggcgagggccgc
gtgttctcctcgcaggccgaggcgatcatggccttcgaccgcggcgagctcgacctcaac
gcgacgatcaaggtgcggatgtcggacctcgtgccgccgagccacgacttcgaggcgccc
gagggctgggagcagggtcagccgatcctgttcgagaccacgctgggccgcacgatcttc
aacgaggccctcccggtcgactacccgttccagaacgaggtcgtcggcaagaaggagctc
tcggcgatcgtcaacgacctcgcggagcgctacccgaaggtcgacgtcgcgacgtcgctc
gacgcgctcaaggacgccggctaccggtgggcgacccgctcgggcgtcacgatcgcgatc
tccgacgtcgccatgccggaggtcaagaacgagatcctcgacgagcacgagcagcgtgcc
ctcaaggtgcagtcgcagttcgagaagggtctgatcaccgacgacgagcgccgtcaggag
ctcatcgagatctggacccaggcgacggacaagatcgccgcggtcatgcgcgagaacctc
gagaacaactcgcggaacacgctgtaccgcatggtctcctcgggcgcccgtggtaactgg
atgcaggtccgccagatcgcgggcatgcgcggcctcgtggccaacccgaagggcgagatc
atcccgcgcccgatcaagtcgaactaccgcgagggcctgtccgtcctcgagtacttcatc
gcctcgcacggtgcccgcaagggtctggccgacacggccctccgtacggcggactcgggc
tacctgacgcgtcgtctcgtggacgtctcgcaggacgtcatcatccgcgaggaggactgc
ggcacggagcgcggcctgacgctgcccgtcgcggagcgcatcggcgacaccctggtgccg
cacccgcgcgtcgagacgagcatctactcgcgcacgttcgcgaccgacgtcgtggacggt
gacggaaacgtcatcgccgaggcgggctcggacgcgggcgacgtcgtgatcggcaaggtc
atcgaggccggcatcgagaacgtcaaggtccgctcggtcctcacgtgcgagtcgcgcgtg
ggcacgtgcgccaagtgctacggccgctccctggccacgggcaagctcgtggacatcggc
gaggccgtcggcatcatcgccgcgcagtccatcggcgagcccggcacccagctgacgatg
cgtaccttccacaccggtggtgtggcgtccgcggaggacatcacgcagggtctgccgcgc
gtcaccgagctcttcgaggcccgcacccccaagggtgaggcgcccatcgcggagtacacg
ggcaccgtgacgatcgaggacacggagcgcacgcgccacctcgtcctcacgccggacgac
ggcggcgaggagatccgctacccggtcaccaagcgtgcccgcctgctggtcgccgacggc
gaccacgtccaggtcggcacccagctggtgcagggtgcggtcgacccgaagaaggtgctg
cgcatcctcggcccgcgtgccgcgcagaagcacctggtggacgaggtccaggagacctac
cggtcgcagggcgtggacatccacgacaagcacatcgaggtcatcgtgcgccagatgctg
cgccgcgtgaccgtgctggactcgggcgacaccgacctcctgccgggcgagctcgcggag
cgcacccgtttcgaggacgccaaccgcaaggccgtggcggagggtggccagccggcctcc
ggccgtccggagctgatgggcatcacgaaggcctcgctcgcgaccgactcgtggctctcg
gccgcctccttccaggagacgacccgcgtgctcaccgaggcggcgatgagcggtcgtcgc
gacccgctgctgggcctcaaggagaacgtcatcatcggtaagctcatccccgccggcacg
ggcctcgcccgctaccggaacatcgaggtcgagccgaccgagcaggccaaggccgagctc
tacccgagcttcggctacgacgagatcgacttcccgacgctcggcatgggctcgggcgag
gcgatcccgctcgaggacctggacttcggcgacttccgctga
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integrated database retrieval system
