Isoptericola variabilis: Isova_0827
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Entry
Isova_0827 CDS
T01520
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
iva
Isoptericola variabilis
Pathway
iva03420
Nucleotide excision repair
iva03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Isova_0827
03430 Mismatch repair
Isova_0827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iva03400
]
Isova_0827
Enzymes [BR:
iva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Isova_0827
DNA repair and recombination proteins [BR:
iva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Isova_0827
MMR (mismatch excision repair)
Other MMR factors
Isova_0827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AEG43613
UniProt:
F6FXB0
LinkDB
All DBs
Position
897658..901281
Genome browser
AA seq
1207 aa
AA seq
DB search
MTSEPAPRPDDADGLFADDVWAAFEAPRDAALGFPELAAEAASPEAGRAPELSARDIAAL
LGRHAPTDEQVAVIEAPLEPVLVVAGAGSGKTETMAARVVWLIANRLVEPEEVLGLTFTR
KAAGELAARVQSRLAQLARAQGRAASALDLLARPTVATYNAYAASLVADHGLRLGIEPGS
RLLGEANQYQLAAQVVESWADDLGTDKAVSTVVGAVLALSGALGEHLVPVDEARDRLREL
VAHLDALPLGPRQKARTKDVQAIIDSVAERERLLDLVEEYRRRKRATDSLDFGDQIAFAA
DLARTVPAVGAHERARYRVVLLDEYQDTSYAQVELLAGLFGGGHAVTAVGDPHQSIYGWR
GASASGLARFPERFRTAAGAPAAVRYLSTSWRNDAAVLAAANVASAPLREPGPGGARVEV
PPLDLRPGAGPGAVAAHVATTLEEEAEAVAEWVAARWRRAARPDGSDRVTAAVLCRARAQ
FPAVEVALRRRGLPVEVVGLGGLLSTPEVVDVVALLEAVHDPSRGDSLVRLLTGPRVNLG
ASDLHALGSWAADLARTDDPHKRTRASSPRAAAPPDGTPDETADGSADETVDETTADETV
VEGDVVDHRSVVDALDDLPEPGVPARDGRVLSPEGHRRLTALARVLRGLRGLTYLSLPEL
VVQAERALGLDVEVATADVLADRLGGAAEGVSLRGREHLDAFRDVAASFAQSADVATLGA
FLAWLGVASEQERGLDMPVREPDPDAVQVITAHASKGLEWDVVAVPGLVDGVFPSQAESA
QGRTDSGWLTDVTALPYHLRGDAEDLPAFRWDLASDTKDLAARRDEFKLDAGAHQLAEER
RLAYVAFTRARRELFLTAHRWGTGSRPRRLSPFLVELVEAGVVSAEGWAGEPDPEGPNPR
DALEASGTWPAADDAAPGSARDVLRATAALVERAAVERAEDVRAAGRPDEEADPVTAPAG
VLTDGAGNDLVELARTLLAERDERTGRAVELPAHVSASGLVRLATDRSEFALQLRRPVPN
EPTVHARRGTRFHEWVEQYFSSASLVDVEDLPGAEDAELPADADLEALRERFLASEWAGR
TPIAIEQDVETPVAGVLLRSRIDAVFTDPDAPPAAPGEPQPVVVVDWKTGREPSDPEARA
AREVQLAVYRLAWSRWTGLPLEKVSAAFCYVASGVTVRPERLLDEHELEALILGTADDHR
RSERSSR
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgacctccgagcccgcaccccgcccggacgacgccgacggcctgttcgccgacgacgtc
tgggccgcgttcgaggcgccgcgcgacgcggcgctcggcttccccgagctcgcggccgag
gcggcgtcgcccgaggccggtcgcgcgccggagctgtcggcgcgcgacatcgccgcgctc
ctgggccggcacgcgccgaccgacgagcaggtcgcggtcatcgaggccccgctcgaaccc
gtgctggtggtcgcgggcgccggctcgggcaagaccgagacgatggcggcgcgcgtcgtg
tggctcatcgcgaaccggctcgtcgagcccgaggaggtcctggggctcaccttcacgcgc
aaggccgcgggcgagctcgccgcgcgcgtccagtcccggctcgcgcagctcgcgcgcgcg
cagggccgggccgcgtcggcgctcgacctgctcgcgcgcccgaccgtcgcgacgtacaac
gcgtacgcggcctcgctcgtcgccgaccacgggctgcggctcggcatcgaaccgggctcc
cggctcctcggcgaggcgaaccagtaccagctggccgcgcaggtcgtggagtcctgggcc
gacgacctgggcaccgacaaggcggtgagcacggtcgtcggcgcggtcctggcgctctcg
ggcgcgctcggcgagcacctcgtgcccgtcgacgaggcgcgcgaccggctgcgcgagctc
gtcgcccacctcgacgcgctgcccctcggcccgcggcagaaggcgcgcaccaaggacgtc
caggcgatcatcgactcggtcgccgagcgtgagcggctgctcgacctcgtggaggagtac
cggcggcgcaagcgtgcgaccgactcgctcgacttcggcgaccagatcgcgttcgcggcg
gacctcgcgcgcaccgtgcccgcggtcggggcgcacgagcgcgcccggtaccgcgtcgtg
ctgctcgacgagtaccaggacacctcgtacgcgcaggtcgagctgctcgccggcctgttc
ggcggcgggcacgcggtcacggcggtcggcgacccgcaccagtcgatctacggctggcgc
ggtgcctcggcgtcgggcctcgcgcggttccccgagcgcttccgcacggcggcgggcgcg
ccggccgcggtccgctacctcagcacctcgtggcgcaacgacgccgcggtgctcgccgcc
gccaacgtcgcgtccgcgccgctgcgcgagccggggccgggcggggcgcgcgtcgaggtc
ccgccgctcgacctgcgcccgggcgcggggccgggggccgtggcggcgcacgtcgcgacg
acgctcgaggaggaggccgaggcggtcgccgagtgggtcgccgcccggtggcggcgcgcg
gcgcgccccgacggctccgaccgcgtgaccgccgcggtgctgtgccgggcgcgggcgcag
ttccccgcggtcgaggtcgcgctgcgacgccgcggcctgcccgtcgaggtggtgggcctc
ggcggcctgctctcgacgcccgaggtggtcgacgtcgtcgcgctgctcgaggccgtgcac
gacccgtcccgcggcgactcgctcgtccggctgctcaccggtccgcgcgtcaacctcggc
gcgtcggacctgcacgcgctcgggtcgtgggccgccgacctggcgcgcaccgacgacccg
cacaagcgcacgcgcgcctcctcgcctcgggccgccgcaccgccggacgggacgccggac
gagacggcggacgggtctgcggacgagaccgtcgacgagacgacggcggacgagaccgtc
gtcgagggcgacgtcgtcgaccaccggtcggtcgtcgacgcgctcgacgacctccccgag
cccggcgtgcccgcgcgcgacggccgcgtcctgtcgcccgagggccaccggcgcctcacc
gcgctggcgcgcgtgctgcgcggcctgcgcgggctgacgtacctgtcgctgccggagctc
gtcgtccaggccgagcgggcgctgggcctcgacgtcgaggtcgcgacggccgacgtcctg
gccgaccgcctcggcggtgcggccgagggcgtcagcctgcgcgggcgcgagcacctggac
gcgttccgcgacgtcgcggcctccttcgcgcagtcggccgacgtcgcgacgctcggtgcg
ttcctcgcgtggctcggcgtcgcgtcggagcaggagcgcggcctcgacatgcccgtgcgc
gagcccgacccggacgccgtgcaggtcatcaccgcgcacgcgtccaagggcctcgagtgg
gacgtcgtggccgtgcccgggctcgtcgacggcgtgttccccagccaggcggagtccgct
cagggccgcacggacagcggctggctcacggacgtcacggcgctgccgtaccacctgcgc
ggcgacgccgaggacctgcccgcgttccgctgggacctcgcgagcgacacgaaggacctc
gccgcgcgccgcgacgagttcaagctcgacgcgggcgcgcaccagctcgccgaggagcga
cggctcgcctacgtcgcgttcacgcgcgcccggcgcgagctgttcctcaccgcccaccgc
tggggcacgggcagcaggccgcggcggctctcgcccttcctcgtcgagctcgtggaggcg
ggcgtcgtgtccgccgaggggtgggccggcgagccggaccccgaggggcccaacccgcgc
gacgcgctcgaggcgtcgggcacgtggccggcggccgacgacgcggcacccggctcggcg
cgcgacgtcctgcgcgcgacggccgcgctcgtcgagcgggcggccgtcgagcgggcggag
gacgtgcgcgccgccggccggccggacgaggaggccgacccggtcacggcgccggccggc
gtcctcaccgacggcgcgggcaacgacctcgtcgagctcgcgcgcaccctcctggccgag
cgggacgagcgcacgggacgcgccgtcgagctgcccgcgcacgtctcggcgtcgggcctc
gtgcggctcgcgaccgaccgctcggagttcgcgctgcagctgcgccgcccggtgccgaac
gagcccaccgtgcacgcgcgccgcggcacccggttccacgagtgggtcgagcagtacttc
agctccgcgtccctcgtcgacgtcgaggacctgcccggcgccgaggacgccgagctgccg
gccgacgccgacctcgaggcgctccgcgaacggttcctcgcctcggagtgggccggacgc
accccgatcgcgatcgagcaggacgtcgagacgcccgtcgccggggtgctgctccgctcg
cgcatcgacgccgtcttcaccgacccggacgcgccgccggcggcgcctggcgagccgcag
ccggtcgtcgtcgtcgactggaagacggggcgggagccgtccgaccccgaggcgcgcgcc
gcccgcgaggtgcagctcgcggtgtaccggctcgcgtggtcgcgctggaccgggctgcct
ctggagaaggtgagcgccgcgttctgctacgtcgcctcgggcgtcacggtgcgccccgag
cgcctgctcgacgagcacgagctcgaggccctcatcctcggcaccgcggacgaccaccga
cgtagcgaacggtcgtcgagatag
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