Isoptericola variabilis: Isova_0880
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Entry
Isova_0880 CDS
T01520
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
iva
Isoptericola variabilis
Pathway
iva03030
DNA replication
iva03430
Mismatch repair
iva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Isova_0880
03430 Mismatch repair
Isova_0880
03440 Homologous recombination
Isova_0880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iva03032
]
Isova_0880
03400 DNA repair and recombination proteins [BR:
iva03400
]
Isova_0880
Enzymes [BR:
iva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Isova_0880
DNA replication proteins [BR:
iva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Isova_0880
DNA repair and recombination proteins [BR:
iva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Isova_0880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Lsr2_DNA-bd
BRCT
PTCB-BRCT
TerB
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
AEG43664
UniProt:
F6FPF1
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All DBs
Position
complement(955602..957215)
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AA seq
537 aa
AA seq
DB search
MGLLDRLLGRRRTSVPRADAAIHQPIEPSPLPGFAVIDVETTGLSPRHDRVLEVAVVRLD
TRGSVLDEWTTRFNPEGPVGATHIHGIRESDVKDAPVFREVATEVRGRLAGLAVAAHNAR
FDLAFVRAEFERAGWELPWLPSFCTLEASHHYLPHLDRRRLTDCCHAAGVRLHHAHSALG
DARAAAGLLAGYLTGLRGVPVHRDLTRLPDEALAVPWPTAPVREPVTALSAPAARRPRPV
RVTPSRPKQPPLVTQLAGLSLQELLDDGAPEGSLNYLEMLIEVLEDGELSESETAALDDV
VELYGLTSSDVEACHRAFVTALAHRALDDGHVSKEERSELHALAELLEVPKATVLQLIDD
ADRARAARLSAGLLPLPDGWTHGEPLRVGDKVVFTGCDDAERARLEQRATELGVRVLGSV
SRLTAMLVTDGSFSGTKLAKATELGIRVVHPEVFEVLLAHLQPAAPATKPAVPTPAAVAT
GATTPTTTAAPLTPGPDTAASPSQIRTWALANGYEVGVRGRLPRAVVDAYHRENPPN
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgctcgaccgcctcctgggccgccgccgaacgtctgtgccgcgtgccgacgct
gccatccaccagcccattgagccgagcccattgccgggtttcgcggtcatcgatgtcgag
acgacgggcctctccccacgccatgacagggtcctcgaggtcgcggtcgtccgcctcgac
acccggggaagcgtgctcgacgagtggacgacgaggttcaacccggagggcccggtcggc
gcgacgcacatccacggcatccgcgagtccgacgtcaaggacgctcccgtgttccgcgag
gtcgcaacggaggtccgcggacgtctcgcgggactcgcggtcgccgcccacaacgctcgc
ttcgatcttgccttcgtgcgcgccgagttcgaacgcgccgggtgggagctcccctggctc
ccgtcgttctgcaccctcgaggccagtcaccactaccttccccacctcgaccggcgccgg
ctcaccgactgctgccacgccgcgggagtcaggctgcaccacgcccactccgctctcggc
gacgcacgtgccgcggcgggtctcctggccggctacctcaccgggctgcgtggcgtccct
gtgcaccgcgacctcacgcgccttcccgacgaggcgctcgccgtgccctggcccaccgcg
cccgttcgagagccggtcacggccctcagcgcgccggccgcgcgtcgcccgcgaccggtc
cgtgtgacgccgtcgcgtccgaagcagccaccactggtcacgcagcttgccggcctgagc
cttcaggaactgctcgacgacggcgcacccgaaggttctctgaactacctcgagatgctc
atcgaagtgctcgaggacggagagctgagcgagtcggaaactgctgcgctggacgacgtg
gtcgagctgtacgggctcacgagctcggacgtcgaggcatgtcatcgggcgttcgtcacc
gcgctggcccatcgcgctctcgacgacggccatgtctccaaggaggagcggtctgagctg
cacgctcttgccgagctgctcgaggtgccgaaggccaccgtcctgcagctcatcgacgac
gcggacagggctcgcgcggcacggctgagcgcaggcctgctcccgctgccggacggctgg
acccacggcgagccgctccgcgtgggcgacaaggtcgtcttcacaggatgcgacgacgcg
gagcgtgccaggctcgagcagcgggcgacggagcttggcgtccgcgtgctcggcagcgtg
tcgcggttgaccgccatgctcgtgaccgacggatcgttctccggcaccaagctggcgaag
gcgacggaactgggcatccgcgtggtgcaccccgaggtcttcgaggtgctcctcgcccat
ctgcaacctgcagcaccggcaacgaagccggcagtgccgacacccgcagcggtcgccacc
ggagcgacgacgcccacgacgacggccgccccgttgacgcccgggccggatactgcggcc
tcaccatcccagatccggacgtgggcgctggccaacggctacgaggtcggggtccgaggc
cggctgccgcgagccgtcgtcgacgcgtaccaccgcgagaacccgccgaactaa
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