Isoptericola variabilis: Isova_1213
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Entry
Isova_1213 CDS
T01520
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
iva
Isoptericola variabilis
Pathway
iva03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Isova_1213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iva03400
]
Isova_1213
Enzymes [BR:
iva01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Isova_1213
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Isova_1213
DNA repair and recombination proteins [BR:
iva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Isova_1213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
zf-TFIIB
OrfB_Zn_ribbon
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AEG43982
UniProt:
F6FRY1
LinkDB
All DBs
Position
complement(1326016..1326918)
Genome browser
AA seq
300 aa
AA seq
DB search
MPELPEVESLARFLDGRTAGRTVVAVDVAAIAALKTFDPPATALVGGRVAGAGRHGKWLD
VAVTPAAGSGGDALHLVFHLARGGWLRWRDQAPTTPVAPRLGGSSRGAALALRVRFDDGS
GFDLTEAGTRKRLAVHVVRDPQEVEQVRTLGIEPLSEDFTADALAALLTRKNQQVKGLLR
DQSAIAGIGNAYSDEILHVARFSPFKLTRSFTPEEVATLHEATVTTLRDAVAASAGRPAA
ELKDAKRRGMRVHGRTGEACPVCGDTVREVSFADRSLQYCPTCQTGGQVLADRRLSRLLK
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgcccgaggtcgagtcgctggcccgcttcctcgacgggcgcacggccggt
cgcacggtcgtcgccgtcgacgtcgcggcgatcgccgcgctcaagacgttcgacccgccc
gcgaccgcgctcgtcggcggccgcgtcgccggcgccggccggcacggcaagtggctcgac
gtcgccgtgacgcccgctgccgggtccggcggcgacgcgctgcacctggtcttccacctc
gcgcggggcgggtggctgcgctggcgcgaccaggcgccgacgacgccggtcgcgccgcgc
ctcggcgggtcctcgcgcggtgcggcgctcgcgctgcgcgtccggttcgacgacggctcg
ggcttcgacctcacggaggccggcacgcgcaagcgcctcgccgtgcacgtggtgcgcgac
ccgcaggaggtcgagcaggtgcgcacgctcggcatcgagccgctctcggaggacttcacg
gccgacgcgctggccgcgctgctcacccgcaagaaccagcaggtcaagggcctgctgcgc
gaccagtccgcgatcgcgggcatcggcaacgcctactccgacgagatcctgcacgtcgcc
cggttcagccccttcaagctcacccgctcgttcacgcccgaggaggtcgccacgctgcac
gaggccacggtgacgacgctgcgcgacgccgtcgcggcgtcggcgggccggcccgcggcc
gagctcaaggacgccaagcgccgcggcatgcgcgtgcacgggcgcacgggcgaggcgtgc
ccggtgtgcggcgacacggtgcgcgaggtgagcttcgccgaccggtcgctgcagtactgc
ccgacgtgccagacgggcgggcaggtcctcgccgaccggcgcctgtcccgcctgctcaag
taa
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