KEGG   Isoptericola variabilis: Isova_1243
Entry
Isova_1243        CDS       T01520                                 
Name
(GenBank) DEAD/H associated domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
iva  Isoptericola variabilis
Brite
KEGG Orthology (KO) [BR:iva00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:iva03400]
    Isova_1243
Enzymes [BR:iva01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Isova_1243
    5.6.2.6  RNA 3'-5' helicase
     Isova_1243
DNA repair and recombination proteins [BR:iva03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Isova_1243
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr WH3_Lhr WH2_Lhr Helicase_C ResIII AAA_25 DUF6406 AbiEi_4 MarR_2 PhoH
Other DBs
NCBI-ProteinID: AEG44012
UniProt: F6FSE5
LinkDB
Position
complement(1357626..1362629)
AA seq 1667 aa
MTSPLERFGPATRAWFAGAFAEPTAAQTSAWEAIGAGRHALVVAPTGSGKTLAAFLWAID
RLTTEPPPAERSRRCRVVYVSPLKALAADVQRNLRSPLAGIRQAAAREGLAVTDVEVGMR
TGDTPASERRSFATRPPDVLITTPESLFLVLTSQARAGLAGVETVIVDEIHAVAGTKRGA
HLALSLERLDALLERPAQRVGLSATVRPVEDVATFLGGHRPLHEGGREVVVVQPPAAKEW
DIDVVVPVPDLADLDSAMPGPSGPDDGAAAPRARRPGPAAGDEELDLAGAATAPLRRASV
WPHVEERVVDLVADHRSTLVFTNSRRGAERLTARMNELWAERLGLDVPDPGTQQAAQTPA
QSGTAAGVPALPDGSAAPVLARAHHGSMSRTERTRTESELKEGRLPAVVATSSLELGIDM
GAVDLVVQVGSPPSVASGLQRIGRAGHQVGAVSRGVVFPTFRGDLVPATVVTRRMRAGEI
EPLHVPANPLDVLAQQVVAALAVDDWQADELLALVRRAAPFATLGDATWHAVLDMLAGRY
PSEDFAELRARIVWDRASGRLSGRPGALRLAATSGGTIPDRGLYGVYLASDADERGPRGG
KRVGELDEEMVYESRVGDTFTLGSSTWRIEEITPDRVLVTPAPGLPGRLPFWKGDSPGRP
AELGRAVGAFVRETDAALAADPELGRARLREEGLDAWAADNLAAYLTEQREATGRLPDDR
TVVVERFRDELGDWRVVIHSPLGARVHAPWALVVGARLRERYGMDVAAMHADDGIVLRLP
DAGDAGWDLGGTGTGWDLGGTGTGWDLGGTGTTPDGGGPGEPGITAEDLLVDPDEVLDAV
RDELGSSVMFAARFREAAARALLLPRRRPDRRQPLWQQRQRAAQLLAVASQFPDFPIVLE
AARECLQDDFDVAALRDLMADLAAGRVRLVEVTTPSPSPFAQSLLFGYTAQFLYDGDAPL
AERRAAALSLDPTLLAELLGDQGATQLADLLDPAAIERTEAELQALAPERQARHAEDLWD
VLRRTGPHPLAALRARTREEVRDEVAGWLADLERARRVIRVRVGGLAHADGDAEQWAVAE
DAGRLRDALGVALPVGVPEAFTEPVADPLGDLLRRHARTHGPFGVADVARRFGLGVAVAG
QALARLEAAGVLVRGRLRPEALGGTGDEWCDPEVLRTLRRRSLAALRAEVEPVEPEALGV
FLPRWQGVAGAGTSGGGTLRGLDGVLRVVEQLSGAAVPASALETLVLPARVADYSPAMLD
ELTTTGEVLWCGHARLPGSGGGDGLVSLHLADGAALTLPPVTPLEEGGPLDTDLHRAVLD
LLTGSGGFFLPRIAERASASASAVLDVLWDLVWAGWVTNDGLGVLREHLGGAGGAHRAPR
QPGRARPVRRSRFALARPAAAPGAAATATGAATPRGGGGRWSALPARETDPTLRTHALTQ
VLLDRHGVLTRAVAPAEGVTAQFRGVYRVLTELEERGAVRRGYFVEHLGGSQFALPGAVD
QLRVDAGDRARVLEAERAEDDRGPAAGAATRHHVVLLAATDPANPYGAALAWPPSAPATG
AADGDGGTHRPGRKAGAVVVLVDGDLVLYVERGGRTLLSFGHGGGRLAAAAAELAGAAGA
GRLGRLLVQRVDGVPALAAARDRTPVAAALLDAGFGVTPRGLRLARG
NT seq 5004 nt   +upstreamnt  +downstreamnt
gtgacgtcaccgctcgagcgcttcggccccgccacgcgcgcgtggttcgcgggcgcgttc
gcggagccgacggcggcgcagacgagcgcgtgggaggcgatcggcgccggccggcacgcg
ctcgtcgtcgcgccgaccgggtccggcaagacgctcgcggcgttcctgtgggcgatcgac
cggctcacgaccgagccgccgcccgcggagcgctcgcggcgctgccgcgtggtctacgtc
tcgccgctcaaggcgctcgcggcggacgtccagcgcaacctccgctccccgctcgccggc
atccgccaggccgccgcgcgcgaggggctcgcggtgaccgacgtcgaggtcgggatgcgc
acgggcgacacgcccgcctcagagcgccggtcgttcgcgacccgccccccggacgtcctc
atcacgacgcccgagtccctcttcctcgtcctgacgtcgcaggcgcgcgcgggcctcgcg
ggcgtcgagacggtcatcgtcgacgagatccacgccgtcgcgggcaccaagcgcggcgcc
cacctggcgctgagcctcgaacgcctcgacgcgctgctcgagcgcccggcgcagcgcgtc
gggctgtcggcgacggtccgtccggtcgaggacgtcgcgacgttcctcggcgggcaccgc
ccgctccacgagggcgggcgcgaggtcgtcgtcgtgcagccgcccgccgccaaggagtgg
gacatcgacgtcgtcgtccccgtgccggacctcgccgacctcgactcggcgatgcccggc
ccgtcggggcccgacgacggcgccgcggccccgcgtgcgcggcggcccggacccgcggcc
ggcgacgaggagctcgacctcgccggcgcggcgacggcgccgctgcggcgtgcctcggtg
tggccgcacgtcgaggagcgcgtggtcgacctcgtggccgaccaccgctcgacgctcgtg
ttcacgaactcccggcgcggcgccgagcggctcaccgcccgcatgaacgagctgtgggcc
gagcggctcgggctggacgtgccggacccgggcacgcagcaggccgcgcagacgccggcg
cagtccggcaccgccgcgggcgtgccggcgctgccggacgggtcggccgctcccgtgctg
gcccgtgcccaccacggctcgatgagccgcacggagcgcacccggaccgagtccgagctc
aaggagggccggctgcccgcggtcgtggcgacgtcgtccctcgagctgggcatcgacatg
ggggcggtcgacctcgtggtccaggtcgggtccccgccgtcggtcgcgagcggtctgcag
cgcatcggccgggccgggcaccaggtcggggccgtctcgcgcggcgtcgtgttcccgacg
ttccggggcgacctcgtgccggcgacggtcgtgacgcggcgcatgcgcgcgggcgagatc
gagccgctgcacgtgccggccaacccgctcgacgtgctcgcgcagcaggtcgtcgccgcg
ctcgccgtcgacgactggcaggccgacgagctgctggccctggtccggcgcgcggccccg
ttcgcgacgctcggcgacgccacgtggcacgcggtgctcgacatgctcgcgggccggtac
cccagcgaggacttcgcggagctgcgggcccggatcgtgtgggaccgcgcgtcgggccgg
ctgtccgggcgccccggcgcgctgcgcctggccgcgacgagcggcggcacgatccccgac
cgcggcctgtacggcgtgtacctggcgtcggacgcggacgagcgcggcccgcgcggcggc
aagcgcgtgggcgagctcgacgaggagatggtctacgagtcgcgcgtcggtgacacgttc
acgctcggctcctcgacgtggcgcatcgaggagatcacgcccgaccgggtgctcgtcacc
cccgcaccagggctgccagggaggctgccgttctggaagggcgactcccccggccggccg
gccgagctgggccgcgcggtgggggcgttcgtgcgcgagaccgacgccgcgctcgccgcc
gacccggagctcggccgcgcgcgcctgcgggaggagggtctcgacgcgtgggccgcggac
aacctcgccgcgtacctcaccgagcagcgcgaggccacgggccggctgcccgacgaccgc
accgtcgtcgtggaacgcttccgcgacgagctcggggactggcgcgtcgtgatccactcc
ccgctcggcgcgcgcgtgcacgcgccgtgggccctggtggtcggggcgcgactgcgcgag
cggtatggcatggacgtggccgcgatgcacgccgacgacgggatcgtgctgcggctgccc
gacgccggggacgcggggtgggacctgggtgggaccggcaccgggtgggacctgggtggg
accggcaccgggtgggacctgggcgggaccggcaccacgccggacggcggcgggccgggc
gagccgggcatcacggcggaggacctgctcgtcgacccggacgaggtgctcgacgcggtc
cgcgacgagctgggctcgtcggtcatgttcgccgcgcgcttccgcgaggcggcggcccgc
gcgctgctgctcccccggcgccgcccggaccgccggcagccgctgtggcagcagcgtcag
cgtgcggcgcagctgctggcggtggcctcgcagttcccggacttcccgatcgtgctcgag
gcggcgcgcgagtgcctgcaggacgacttcgacgtcgccgcgctgcgcgacctcatggcc
gacctcgccgcggggcgcgtgcggctcgtcgaggtcacgacgccgtcgccgtcgcccttc
gcgcagtccctcctgttcgggtacaccgcccagttcctgtacgacggcgacgcgcccctc
gccgagcggcgcgcggccgcgctgtcgctcgacccgacgctgctggccgagctgctgggc
gaccagggcgcgacgcagctcgccgacctgctcgacccggccgcgatcgagcgcacggag
gccgagctccaggcgctcgcgccggaacgccaggcccggcacgccgaggacctgtgggac
gtcctgcgccgcacggggccgcacccgctcgccgcgctgcgggcccgcacgcgcgaggag
gtgcgcgacgaggtcgccggctggctcgccgacctcgagcgcgcgcgccgcgtcatccgc
gtgcgcgtcggcgggctcgcgcacgccgacggtgacgcggagcagtgggccgtcgcggag
gacgccggccgcctgcgggacgcactcggcgtcgcgctccccgtgggggtcccggaggcg
ttcaccgagcccgtcgcggacccgctcggggacctgctgcgccggcatgcgcggacccac
ggcccgttcggggtcgccgacgtcgcgcgccggttcgggctcggcgtcgcggtcgcgggg
caggcgctcgcgcggctggaggcggcgggcgtgctcgtgcgcggtcggctccgccccgag
gcgctcggcgggaccggggacgagtggtgcgacccggaggtcctgcgcacgctgcgccgc
cggtcgctcgccgcgctgcgcgccgaggtggagcccgtcgagcccgaggcgctcggggtg
ttcctcccgcgctggcagggcgtcgcgggcgccggcacgtccggcggcggcacgctgcgg
ggcctcgacggcgtgctgcgcgtcgtcgagcagctctcgggtgcggccgtcccggcgtcg
gccctcgagacgctcgtgctcccggcgcgcgtggccgactactcccccgcgatgctcgac
gagctcacgacgacgggcgaggtgctctggtgcgggcacgcgcggcttcccggctccggg
ggcggggacgggctcgtgagcctgcacctcgccgacggggccgcgctcacgctgccaccg
gtgacccccctcgaggagggtggtccgctcgacaccgacctgcaccgcgcggtgctcgac
ctgctcaccgggtcgggcgggttcttcctgccccggatcgccgagcgcgcgagcgcgtcg
gcgtcggccgtgctcgacgtgctgtgggacctggtctgggcgggctgggtcacgaacgac
gggctcggcgtcctgcgcgagcacctcgggggcgccggcggcgcgcaccgcgcgccgcgg
cagccgggccgcgcgcggccggtgcgccgctcgcgcttcgcgctcgcccgtccggcggcg
gcgccgggcgccgcggcgaccgccacgggagccgcgacgccgcgcggcggcgggggccgc
tggtccgccctgcccgcgcgcgagaccgacccgacgctgcgcacgcacgccctgacgcag
gtgctgctcgaccggcacggcgtcctgacccgggccgtggccccggccgagggcgtcacg
gcgcagttccgcggcgtgtaccgcgtgctcaccgagctcgaggagcgcggcgcggtgcgg
cgcggctacttcgtcgagcacctgggcgggtcgcagttcgcgctccccggcgcggtggac
cagctgcgcgtggacgcgggcgaccgtgcgcgcgtgctcgaggccgagcgcgccgaggac
gaccgcggccccgcggccggcgcggcgacccggcaccacgtggtgctgctcgccgcgacc
gacccggccaacccgtacggcgccgcgctcgcgtggcccccttccgcgccggccaccggt
gcggcggacggcgacggcggcacgcaccgaccgggccgcaaggccggcgccgtcgtcgtc
ctcgtcgacggcgacctcgtgctctacgtggagcgcggcggccggacgctcctgtccttc
gggcacggcggcggccggctcgcggccgccgcggccgagctcgccggggcggcgggcgcc
ggacggctcggccggctcctcgtccagcgggtcgacggggtgccggccctcgcggccgcg
cgggaccggacgccggtcgcggcggcgctgctcgacgccgggttcggcgtcacgccgcgc
gggctgcggctggcgaggggctga

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