Isoptericola variabilis: Isova_1302
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Entry
Isova_1302 CDS
T01520
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
iva
Isoptericola variabilis
Pathway
iva03030
DNA replication
iva03430
Mismatch repair
iva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Isova_1302
03430 Mismatch repair
Isova_1302
03440 Homologous recombination
Isova_1302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iva03032
]
Isova_1302
03400 DNA repair and recombination proteins [BR:
iva03400
]
Isova_1302
Enzymes [BR:
iva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Isova_1302
DNA replication proteins [BR:
iva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Isova_1302
DNA repair and recombination proteins [BR:
iva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Isova_1302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
HHH_3
DUF655
Motif
Other DBs
NCBI-ProteinID:
AEG44071
UniProt:
F6FSK4
LinkDB
All DBs
Position
1422208..1425792
Genome browser
AA seq
1194 aa
AA seq
DB search
MPDAAPPAPAQSAQKSDDFVHLHVHTEYSMLDGAARLPELFAEVQRLGQKAIAITDHGYL
FGAFDFWSTAQKFDVKPIIGVEAYVTPGTSRHDRTKVLWGEASQRRDDVSAGGAYTHMTL
WAKDNPGMHNLFRASSLASLDGQMGKWPRMDRELLETYHEGLMATTGCPSGEVQTRIRLG
QWDEAVRAAGELQDIFGKENYFVELMDHGIEIETRVTKDLLRLAEAIGAPLVATNDLHYT
KREDAHSHEVLLAVNSGSSLDEPTYDQGGNRFAFSGDTYYVRSGAEMRRLFSELPEACDN
TLAIAERCEVSFDTGANYMPRFPVPDGEDEISWFVKEVERGLHRRYPQGIPDAVRKQATY
ETEVIIQMGFPGYFLVVADFINWAKEQGIRVGPGRGSAAGSMVAYVMGITELDPLEHGLI
FERFLNPERVSMPDVDVDFDERRRAEVIRYVTEKYGDDRVAMIVTYGSIKAKQALKDASR
VLGFPFAMGEKLTKAMPPAVMGKDIPLSGIFDPQHPRYPEAAEFRQVHDSDPEAQRVVET
ARGIEGLKRQWGVHAAGVIMSSEPLIDIIPIMRRPQDGAVITQFDYPTSEGLGLIKMDFL
GLRNLTILDDALENIVNNGKDPVAIEQVALDDKATYELLARGDTLGVFQLDGGPMRALLR
QMRPDKFDDLSAVIALYRPGPMGMNSHVNYALRKNGLQTIEPIHPELAEPLAEVLDETYG
LIVYQEQVQRAAQILAGYSLGQADLLRRAMGKKKPEVLAKEFVNFEAGCKERGYSDAAIK
AVWDTLVPFAGYAFNKAHSAGYGLVAYWTAYLKANYPTEYMAALLQSVRDDKDKMALYLN
ECRRMHITVLPPDVNDSAAKFTAVGSDIRFGLTAIRNVGANVVDAIITARETKGAFTSFQ
DFLDKVPAVVCNKRTIESLIKAGAFDSLGHARRALLIIHEQAVDSVISVKRKEAEGQFDL
FADFGGAADDGMNFSVDVPDLPDWDKKQRLAFEREMLGLYVSDHPLSGLEHVLARAADTS
IATLVADEGRPDGSTVTVAGLITSLQRKMSKNGNPWAAVTIEDLEGAVEVMFFGETYLAY
STILAEDQVITLKGRVRRRDDQMQLQAMEVSLPDTSAVADTPVLVTVPHTRCVEPVMVRL
REVLATHPGPAEVHVSVAEPGKRTVVRAGDGLRVEKSPALFGDLKALLGPACLS
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgccgcaccccccgcacccgcgcagagcgcgcagaagagcgacgacttcgtc
cacctccacgtgcacaccgagtactcgatgctcgacggcgcggcgcggctgccggagctc
ttcgccgaggtgcagcgcctcggccagaaggcgatcgcgatcaccgaccacggctacctg
ttcggcgccttcgacttctggagcacggcgcagaagttcgacgtcaagccgatcatcggc
gtcgaggcgtacgtgacgccgggcacgagtcggcacgaccgcaccaaggtcctgtggggc
gaggcgtcgcagcggcgcgacgacgtctcggccggtggcgcatacacgcacatgacgctg
tgggccaaggacaacccgggcatgcacaacctgttccgggcgtcgtcgctcgcgtcgctc
gacggccagatgggcaagtggccccgcatggaccgcgagctgctcgagacctaccacgag
ggcctcatggcgaccacgggctgcccctcgggcgaggtccagacgcgcatccggctcggg
cagtgggacgaggccgtgcgggcggccggcgagctgcaggacatcttcggcaaggagaac
tacttcgtcgagctcatggaccacgggatcgagatcgagacccgggtcaccaaggacctc
ctgcgcctcgccgaggccatcggggcaccgctcgtcgcgaccaacgacctgcattacacc
aagcgcgaggacgcccactcccacgaggtcctgctcgccgtgaactcgggctcgtcgctc
gacgagcccacgtacgaccagggcggcaaccgcttcgcgttcagcggcgacacctactac
gtccgttcgggcgccgagatgcgccggctgttctccgagctgcccgaggcgtgcgacaac
acgctcgcgatcgccgagcgctgcgaggtctcgttcgacaccggcgcgaactacatgccc
cgcttcccggtcccggacggcgaggacgagatcagctggttcgtcaaggaggtcgagcgc
gggctgcaccgccggtacccgcaggggatcccggacgcggtgcgcaagcaggccacgtac
gagaccgaggtcatcatccagatgggcttcccggggtacttcctcgtggtcgccgacttc
atcaactgggccaaggagcagggcatccgcgtcgggccgggccgcggctcggccgccggc
tcgatggtcgcgtacgtcatgggcatcaccgagctcgacccgctcgagcacgggctcatc
ttcgagcggttcctcaacccggagcgcgtctccatgcccgacgtcgacgtcgacttcgac
gagcgccggcgcgccgaggtcatccggtacgtcacggagaagtacggcgacgaccgcgtg
gcgatgatcgtcacctacggctcgatcaaggccaagcaggcgctcaaggacgcctcgcgc
gtgctgggcttcccgttcgcgatgggcgagaagctcaccaaggccatgccgcccgcggtc
atgggcaaggacatccccctgtccggcatcttcgacccgcagcacccgcgctaccccgag
gccgcggagttccgccaggtccacgactccgacccggaggcgcagcgcgtcgtcgagacg
gcgcgcggcatcgagggcctcaagcggcagtggggcgtgcacgcggccggcgtcatcatg
tcgagcgagccgctcatcgacatcatcccgatcatgcgccgcccgcaggacggggcggtc
atcacgcagttcgactacccgacgtccgagggcctcggcctcatcaagatggacttcctc
gggctgcgcaacctcacgatcctcgacgacgcgctcgagaacatcgtcaacaacggcaag
gacccggtcgcgatcgagcaggtcgcgctcgacgacaaggccacctacgagctgctcgcg
cgcggcgacacgctcggcgtgttccagctcgacggcgggcccatgcgcgcgctgctgcgg
cagatgcgaccggacaagttcgacgacctgtcggccgtcatcgcgctgtaccggcccggc
ccgatgggcatgaactcgcacgtgaactacgcgctgcgcaagaacggcctgcagacgatc
gagccgatccaccccgagctcgccgagccgctcgccgaggtgctcgacgagacgtacggc
ctcatcgtctaccaggagcaggtgcagcgcgccgcgcagatcctcgcggggtactcgctc
ggccaggccgacctgctgcgccgcgccatgggcaagaagaagcccgaggtgctcgccaag
gagttcgtcaacttcgaggcggggtgcaaggagcgcgggtactccgacgccgcgatcaag
gccgtgtgggacacgctcgtcccgttcgccgggtacgcgttcaacaaggcgcactccgcg
ggctacgggctcgtcgcgtactggaccgcctacctcaaggcgaactacccgacggagtac
atggccgcgctgctgcagagcgtgcgcgacgacaaggacaagatggcgctctacctcaac
gagtgccgtcgcatgcacatcacggtcctgcccccggacgtcaacgactccgcggccaag
ttcaccgccgtcggctcggacatccggttcggcctcaccgcgatccgcaacgtcggcgcc
aacgtcgtcgacgcgatcatcaccgcgcgggagaccaagggcgcctttacctcgttccag
gacttcctcgacaaggtgcccgcggtcgtgtgcaacaagcgcacgatcgagtcgctcatc
aaggccggcgcgttcgactcgctggggcacgcccggcgcgcgctgctaatcatccacgag
caggccgtcgactccgtcatcagcgtcaagcgcaaggaggccgaggggcagttcgacctc
ttcgccgacttcggcggcgccgccgacgacggcatgaacttctcggtcgacgtgccggac
ctgcccgactgggacaagaagcagcggctcgcgttcgagcgcgagatgctcggcctctac
gtctccgaccacccgctgtccggcctcgagcacgtgctcgcgcgcgcggccgacacgtcg
atcgcgacgctcgtcgccgacgagggccggcctgacggctcgaccgtgaccgtcgccggg
ctcatcacgtcgctgcagcgcaagatgagcaagaacggcaacccgtgggcggccgtcacg
atcgaggacctcgagggcgcggtcgaggtgatgttcttcggcgagacgtacctggcgtac
tcgacgatcctcgccgaggaccaggtgatcacgctcaagggccgcgtgcgccgccgcgac
gaccagatgcagctccaggccatggaggtgtcgctgcccgacacgtcggccgtcgcggac
acgcccgtgctcgtcacggtgccgcacacccggtgcgtcgagcccgtcatggtgcggctg
cgagaggtgctcgcgacccaccccggcccggccgaggtgcacgtgagcgtggcggagccg
ggcaagcgcaccgtggtgcgcgccggtgacggcctgcgcgtcgagaagtcgcccgccctg
ttcggcgacctcaaggcgctgctcgggccggcctgcctctcgtga
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