Isoptericola variabilis: Isova_1586
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Entry
Isova_1586 CDS
T01520
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
iva
Isoptericola variabilis
Pathway
iva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Isova_1586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iva03019
]
Isova_1586
03009 Ribosome biogenesis [BR:
iva03009
]
Isova_1586
Enzymes [BR:
iva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Isova_1586
Messenger RNA biogenesis [BR:
iva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Isova_1586
Ribosome biogenesis [BR:
iva03009
]
Prokaryotic type
rRNA helicases
Isova_1586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
AAA_22
ResIII
CMS1
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
AEG44339
UniProt:
F6FUZ9
LinkDB
All DBs
Position
1718733..1720556
Genome browser
AA seq
607 aa
AA seq
DB search
MSTSETTLPTDVTFTDLALPAPLQAAVDDLGFTTPSPIQARAIPALLSGRDITGVAQTGT
GKTAAFGLPLLAAVDPAASVAGGHVQALVLTPTRELAIQVADAIESFATHLPGLRVLSVY
GGAPYVPQQRALRDGVHVVVGTPGRVMDHMERGALSLDAVRFLVLDEADEMLRMGFAEDV
EKIFGQAPERRQVALFSATMPPAIRTVAETHLTDPVEITVSRQSSTTTNVEQSYAIVPFR
HKVGSLVRVLATSDADATIVFTRTRAAAEEVGAALVERGISASTISGDVAQKERERIVER
LRSGALDVLVATDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGKALSFVT
PHERGKLKHIERTIRAELTEVEIPSPKDVSEHRARRMLDAVAARREAGRLDLYAQMLSER
TGGAEPSEVLEVAAALLALAVGDDGPRQRAEQEEFERQRAEARGGRTRETHRAEREDREG
DRTHRHPRADRPERGDRRRRDHDDRSGIRRPAAGTRYRLAVGHTHGVQPRGIVGALTNEG
GLTGADIGKIDIFGSFSLVDITTPLDTATMDRIGRAHVAGKQLRIAVDKGAPERRAPRTE
RRPAHSS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctctgagacgaccctgcccaccgacgtcacgttcaccgacctcgccctgccc
gcaccgctgcaggccgccgtcgacgacctcggcttcaccaccccgtcgcccatccaggcc
cgggccatccccgccctgctgtccgggcgcgacatcaccggcgtcgcccagaccggcacc
ggcaagaccgccgcgttcggcctgcccctgctggccgccgtcgaccccgccgccagcgtg
gcgggcggccacgtccaggccctcgtcctcacgccgacgcgcgagctcgccatccaggtc
gccgacgcgatcgagtccttcgcgacccacctgcccggcctgcgcgtcctgtccgtgtac
ggcggcgcgccgtacgtgccccagcagcgcgccctgcgcgacggcgtccacgtcgtcgtc
ggcacccccggccgcgtcatggaccacatggagcgcggtgcgctctccctcgacgccgtg
cgcttcctcgtgctcgacgaggccgacgagatgctccgcatgggcttcgccgaggacgtc
gagaagatcttcggccaggcgcccgagcgccggcaggtcgcgctcttctccgcgaccatg
ccccccgccatccgcaccgtcgccgagacgcacctgaccgaccccgtcgagatcaccgtc
tcccggcagtccagcaccaccaccaacgtcgagcagtcgtacgcgatcgtgccgttccgc
cacaaggtcggctcgctcgtccgcgtgctcgcgacctccgatgccgacgccaccatcgtc
ttcacgcgcacccgtgctgccgccgaggaggtcggcgccgcgctcgtcgagcgcggcatc
tccgcctccaccatctccggcgacgtcgcgcagaaggagcgcgagcgcatcgtcgagcgc
ctccgctcgggagccctcgacgtcctcgtcgccaccgacgtcgccgcccgcgggctcgac
gtcgaccgcatcggcctcgtcgtcaacttcgacatcccccgcgaggccgaggcctacgtg
caccgcatcggccgcaccggccgcgccgggcgcaccggcaaggccctgtcgttcgtcacc
ccgcacgagcgcggcaagctcaagcacatcgagcgcaccatccgcgccgagctcaccgag
gtcgagatcccctcccccaaggacgtctccgagcaccgcgcccgccgcatgctcgacgcc
gtcgccgcccgccgcgaggccggccgcctcgacctgtacgcccagatgctctccgagcgc
accggcggcgccgagccgtccgaggtcctcgaggtcgcggcggcgctcctggcgctcgcg
gtcggcgacgacggccctcgccagcgcgccgagcaggaggagttcgagcgccagcgcgcc
gaggcccgcggcggccgcacgcgcgagacgcaccgtgccgagcgcgaggaccgcgagggc
gaccgcacgcaccggcacccgcgggcggaccgtcccgagcggggcgaccgccgtcggcgc
gaccacgacgaccggtccggcatccgccggcccgcggcgggcacccgctaccggctcgcc
gtcgggcacacgcacggcgtgcagccgcgcggcatcgtcggcgcgctgacgaacgagggc
ggcctcacgggcgccgacatcggcaagatcgacatcttcggcagcttctcgctcgtcgac
atcacgacgccgctcgacacggccaccatggaccgcatcggtcgggcgcacgtggccggc
aagcagctgcgaatcgcggtcgacaagggcgcgcccgagcgccgcgccccgcgcaccgag
cgccgccccgcgcacagcagctga
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