Isoptericola variabilis: Isova_1806
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Entry
Isova_1806 CDS
T01520
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
iva
Isoptericola variabilis
Pathway
iva02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Isova_1806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iva03021
]
Isova_1806
Transcription machinery [BR:
iva03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Isova_1806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AEG44552
UniProt:
F6FWH8
LinkDB
All DBs
Position
complement(1952671..1954314)
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AA seq
547 aa
AA seq
DB search
MASTTQNPALPREFEHPALQELLTRGTAAGRVDAESFRSACEAAAVTEPKRLKAVLRALA
LAGVDVAVPAGTKVAAAAAPRATSTRAKAPAARTATKSAAAPSRAAEASDAAGVADEAEQ
AEPEAAAPARKTTRAAASRTKTAAPKSTAKRGKAKAKDEDEVEIADGVVEEDVDLDVDVA
DLEPDDAEVVAEEVAAPAAKGDKPRAAKGDDEDTGFVVSDTDDEDQPAQQVVTAGATADP
VKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEERLSKEFGEGWDKTKASAEERRLYRDL
QWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGY
KFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAK
ELDMTPEKVVEVQKYGREPISLSTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLH
QVLDTLSEREAGVVSMRFGLQDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQ
VLRDYLD
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
gtggcgtccaccacgcagaaccccgcgcttccccgagagttcgagcaccctgcgctccag
gagctcctgacccgagggacggcggccggccgcgtcgacgcggagagcttccggtcggcg
tgcgaggccgctgccgtgaccgagcccaagcggctcaaggccgtgctgcgcgcgctcgcc
ctggcgggcgtcgacgtcgccgtgcccgcgggcacgaaggtcgcggccgccgccgctccg
cgcgccacctcgacccgtgccaaggcccccgcggccaggacggccacgaagtccgcggcc
gcgccgtcgcgcgccgccgaggcgtccgacgccgcgggcgtcgccgacgaggccgagcag
gcggagccggaggccgccgccccggcgcgcaagacgacccgcgcggcggcgtccaggacg
aagacggccgcgccgaagtcgaccgccaagcgcggcaaggcgaaggccaaggacgaggac
gaggtcgagatcgcggacggcgtcgtcgaggaggacgtcgacctcgacgtcgacgtcgcc
gacctcgagcccgacgacgccgaggtggtcgccgaggaggtcgccgcgcccgccgcgaag
ggcgacaagccccgtgccgcgaagggcgacgacgaggacaccggcttcgtcgtgtccgac
acggacgacgaggaccagccggcgcagcaggtcgtcaccgcgggcgccacggccgacccg
gtcaaggactacctcaagcagatcggcaaggtcgcgctgctgaacgccgagcaggaggtc
gagctcgccaagcgcatcgaggccggtctgttcgccgaggagcgtctgtcgaaggagttc
ggcgagggctgggacaagaccaaggcctcggccgaggagcgccgcctgtaccgcgacctg
cagtggatcgcgcacgacggcaagcgcgccaagaaccacctgctcgaggcgaacctgcgc
ctcgtcgtctcgctcgccaagcgctacacgggccgcggcatgctgttcctggacctcatc
caggagggcaacctcggtctgatccgcgcggtcgagaagttcgactacaccaagggctac
aagttctcgacgtacgccacgtggtggatccgccaggcgatcacgcgcgcgatggccgac
caggcccgcaccatccgcatcccggtgcacatggtcgaggtcatcaacaagctcgcgcgc
gtccagcggcagatgctccaggacctgggccgcgagcccacgcccgaggagctcgccaag
gagctcgacatgacgcccgagaaggtcgtcgaggtccagaagtacggccgcgagcccatc
tcgctgtccaccccgctcggcgaggacggcgacagcgagttcggcgacctcatcgaggac
tccgaggccgtcgtgcccgcggacgccgtgtcgttcacgctcctgcaggagcagctgcac
caggtcctcgacacgctctccgagcgcgaggccggcgtggtgtccatgcggttcgggctc
caggacggccagccgaagacgctcgacgagatcggcaaggtctacggcgtgacccgcgag
cggatccgccagatcgagtcgaagaccatgtcgaagctgcggcacccgtcgcgctcgcag
gtcctgcgcgactacctcgactga
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