Jejubacter calystegiae: FEM41_00440
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Entry
FEM41_00440 CDS
T05975
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
izh
Jejubacter calystegiae
Pathway
izh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
izh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FEM41_00440 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
izh03400
]
FEM41_00440 (recB)
Enzymes [BR:
izh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FEM41_00440 (recB)
DNA repair and recombination proteins [BR:
izh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FEM41_00440 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_22
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QCT18217
UniProt:
A0A4V1G730
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All DBs
Position
complement(100845..104381)
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AA seq
1178 aa
AA seq
DB search
MTDIAAQPLDPLRLPLTGERLIEASAGTGKTYTIAALYLRLLLGLGGEAAFPRPLGVEEL
LVVTFTEAATAELRGRIRARIHDLRIACVRGESDDPLLSRLLAEIPEPARAADILRFAER
QMDEASVFTIHGFCQRMLSLNAFESGMLFEQQLLEDESVLRQQACADFWRRHCYPLSRPV
AQAISVQWSGPLALLHDIDSWLQGEAPQLKRPPQEDETLEQRHQRNLARIDAVKAQWREA
APGLAALIGDSGVDKRSFSSRNLPRWLEGVGEWADEPTHGYQLPEALEKFSQRFLDEKTK
KGEPPRHPLFSAIEALLDEPPGLRDLVIARALAEIRQTVAREKQRRGELGFDDMLSRLDA
ALSQPGGDALAEAIRRRFPVAMIDEFQDTDPQQYRIFRRIWLGQQETGLLLIGDPKQAIY
AFRGADIFTYMRARSEVSAHYTLDTNWRSSPGMVESVNRLFAHQENAFLFRQIPFQPVNA
APPNGQMRFTLNGEVSPAMSVWLQPGDGCGVSDYQQTMARQCAIQIRDWLTAGQNGDALL
WRGERSRPVEAQDITVLVRSRNEAAIVREALAALNIPSVYLSNRDSVFVTPEARELHWLL
QAVLAPGQESALRSAMATSILGLDAAAIDAMNQDERAWDRLVEEFDEYRQLWLRRGVMPM
IRAMMAKRGLAENLLASPGGERRLTDLLHLSELLQEASARLDSEHALVRWLAQHIEAPDN
NAASQQLRLESDRHLVQIVTIHKSKGLEYSLVWLPFIASFRPQKQALWHDRDSFQTLLDL
SDDKQGLELAEEERLAEDLRLLYVALTRAIWHCSIGIAPLYLRGRTKKGDSDLHLSAIGW
LIQRATPCDAAGLRQALENLCSDDIQLRELAMDDERPWQPNAPAARELAAREATRARREP
WRVTSYSGLTRHGGGIAQDLMPRLDVDASGSAEQSSEPLLTPHHFPRGASPGTFLHGLFE
QLDFTQPVDPDWLGEQLQLGGYDEAWQPVLAPWLEQILAVPLGDDGVSLNQLSARERQVE
LEFYLPISAALTPDKLDALAHRYDPLSARCPELQFQQIRGMLKGFIDLVFRWRGRYYLLD
YKSNWLGEGSEAYTREAMEKAMCEHRYDLQYQLYSLALHRYLRHRLADYDYERHFGGVIY
LFLRGVEPGNSQQGIFTTRPDPALVAGLDALFSGQEAS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatatcgccgcgcagccccttgatcccctacggttgccgctcacgggtgagcgg
ctgatcgaggcttcggcgggcaccggtaaaacctacaccattgcggcgctctatctgcgc
ctgttgctcggcctgggaggggaagctgcctttcccaggccgctcggcgtggaagagctg
ctggtagtgaccttcaccgaagcggccaccgccgaactgcggggccgtattcgcgcccgt
attcacgacctgcgtatcgcctgcgtgcgtggggaaagcgacgatcccctgctaagccgt
ctgctggcggagatccccgaacctgcccgggccgccgatattttgcgctttgctgagcgt
cagatggatgaagcctcggtttttaccatccacggtttctgccagcgcatgcttagcctg
aatgctttcgagtccggtatgctgtttgaacaacagctactggaagatgagagcgtgctg
cgtcagcaggcgtgcgccgatttctggcgccgccactgctatccgctatccaggcctgtg
gcccaggcgattagcgtgcagtggtccggcccgctggcgctgttgcacgatatcgacagc
tggctgcagggcgaggcgccgcagttgaaacgtccgccccaggaggatgagaccctggaa
cagcgtcatcagcgcaatctggcgcgtatcgacgcggtaaaagcgcagtggcgggaagcg
gcccccgggctggcggcgcttattggcgattccggcgtggataagcgcagtttcagcagc
cgtaacctgccgcgctggcttgagggggtgggggagtgggccgacgagccaacccacggc
tatcaattgccggaagcgctggaaaaattcagccagcgctttcttgatgaaaagaccaaa
aagggcgagccgccgcgtcatccgctgtttagcgccatcgaggcgctactggatgagccg
ccgggtctgcgcgatctggtgattgcccgggcgctggcggagattcgccagaccgtggcg
cgtgaaaagcagcggcggggcgagctgggctttgacgatatgttgagtcggctggatgcc
gccctgagccagccggggggagatgcgctggcggaagccatccgtcgccgctttccggtg
gcgatgatcgatgaatttcaggataccgacccccagcagtatcgtatcttccgccgcatc
tggcttgggcagcaggaaaccggactgctgctgataggcgatcccaagcaggctatctat
gcctttcgcggcgcggatatttttacctatatgcgcgcccgctccgaggtgagcgcccac
tatacgctggacaccaactggcgctcgtcgccgggaatggtcgaaagcgtcaaccgcctg
ttcgcccaccaggaaaacgcctttctgtttcgtcagattccgtttcagccggtcaatgcg
gcgccgcccaatgggcaaatgcgctttaccctgaatggcgaggtgagcccggccatgtcg
gtctggctccagcctggcgatggctgtggagtaagtgattaccaacagacaatggcccgc
cagtgtgcgatccagattcgcgactggctaacggcagggcaaaatggtgacgcgctgctg
tggcgcggggagcgctcgcgcccggttgaagcccaggatattaccgtgctggtacgtagc
cgcaacgaggcggctattgtccgggaggcgctggcggcgctgaatattccttcggtctat
ctttcaaaccgcgacagcgtgttcgtcacccccgaagcgcgcgaactacactggctgttg
caggcggtgctggcaccgggccaggagagcgcactgcgcagcgccatggcgaccagtatc
ctggggctggatgccgccgccatcgatgccatgaaccaggacgaacgggcctgggaccgg
ctggtggaagagtttgatgaatatcgccagctctggttacgacgcggggtgatgccgatg
attcgcgccatgatggctaagcgcgggctggcggaaaacctgctggcttcccccggcggc
gagcggcgcctgaccgatctgctgcacctgagtgaactgttgcaggaagcctcagcccgc
ctcgacagcgaacatgccctggtgcgctggctggcgcagcatatcgaagccccggataac
aatgccgccagccagcagctccggctggagagcgatcgccatctggtgcagattgtcacc
atccacaaatcgaaagggctggaatattccctggtctggctgccctttatcgcctcgttc
cgcccccagaaacaggcgctgtggcacgatcgcgacagcttccagacgctgctggatctg
agcgacgataaacaggggctggaactggcggaagaggagcggctggcggaggatctgcgc
ctgctctatgtggccctgacccgcgccatctggcactgtagcatcggtatcgcgccgctc
tatctgcggggcagaacgaagaaaggcgattccgacctgcaccttagcgctatcggctgg
ttgattcagcgcgctactccctgcgacgcagcggggctgcgccaggcgctggaaaatctg
tgcagcgacgatattcagcttcgggagctggcgatggacgatgaacggccatggcagccg
aacgcccccgctgcgcgcgaactggcggcaagagaggccactcgtgccaggcgtgaaccc
tggcgggtgaccagctattccgggctgacccgccacggcggcggcatcgctcaggatctg
atgccgcgcctggatgtggatgcttcaggcagcgcggaacagagcagtgagccattactt
actccccatcacttcccgcgaggcgcttcgccgggaaccttcctgcatggcctgttcgaa
cagctggattttacccaaccggtggatccggactggcttggtgagcagttacagctcggc
ggctacgacgaagcgtggcagccggtactggctccgtggctggaacagattctggccgtg
ccgctcggtgatgacggcgtcagtctgaatcagctttctgcccgtgagcgtcaggtggag
ctggaattttacctgccgattagcgcggctctgacgcctgataagctggatgcgctggcc
caccgctacgatccgctgtcggcgcgctgcccggaactgcagttccagcagattcgcggc
atgctgaaggggtttatcgacctggtattccgctggcgtgggcgctattacctgctggac
tataaatcgaactggctgggggaaggcagcgaagcttatacccgcgaggcgatggaaaag
gcaatgtgcgaacaccgctacgatctgcaatatcagctctacagcctggcgttgcaccgt
tatctgcgccatcggctggcggattatgattatgaacgtcattttggcggcgtcatctat
ctgtttctgcgcggcgttgagccgggcaattcacagcagggcatcttcactacccggcct
gatccggcgctggtggcggggctggatgcgctcttttccgggcaggaggcatcatga
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