Jejubacter calystegiae: FEM41_03070
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Entry
FEM41_03070 CDS
T05975
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
izh
Jejubacter calystegiae
Brite
KEGG Orthology (KO) [BR:
izh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
izh03019
]
FEM41_03070 (csrD)
Messenger RNA biogenesis [BR:
izh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FEM41_03070 (csrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Motif
Other DBs
NCBI-ProteinID:
QCT18699
UniProt:
A0A4P8YDW2
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Position
complement(670808..672748)
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AA seq
646 aa
AA seq
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MRLTTKFSTFMTLLTGLAILVTLLGCSWSFYHSIHERGEHRLNRIVALVDNELLVRPPEQ
LDDRLNDMMVPLEIVRLTLSSGSLQVLDHELPPSYQPAGQHVRLRHHSVRLVKHPSLVLH
LTWRDPVDDYFHSLLTTTPLSLAIAFMVIVLVFGARWVKRQFSGLELLESRSTRILNGER
GKVVRGSLHEWPPRTSSAMDVLLSELHNAGEQRSRVDTLIRSYAAQDAQTGLSNRLFFEN
QLAMLLEDNEQVGTHGMVMMIRVPDFEILRETWERHSVDDYLYNLINLLSTFVMRYPGAL
LARYFHNDFAVLLPHSTLKEADGIASQLLKSVDAMPPTRMLDPLDMVHIGICAWRGGQSV
EQVMEHAEAAVRNAVLQGSNSWAVYDDKLPEKGRGNVKWRTMLEDALRRGGPRLYQKPSV
LRSGEVHHREMAGRIFDGETEVTSAEYMPVVQQLGLAEQYDRQMISRMIPLLRFWPEETL
AFPVTVESLLRRPFQRWLRDTLMQCEKSIRNRILFELAEADVCQYISRLQPIVRLIKVLG
ARVAITQAGLTVVSTTYLQDLDAEILKLYPGLVRNIDKRTENQLFVESLVEACKGTRTMV
FATGTRTRGEWQTLIEKGVSGAQGEFFVGSEPLDSNVKKYSRRYPV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttaacgacgaaattttccacctttatgaccctgctgacggggctggctattctg
gtcaccctgttggggtgttcgtggagtttttaccattcgattcatgagcggggcgagcac
cgtctgaaccgaattgtagcgctggtggataacgaactgctggtgcgcccgcctgagcag
ctggacgatcgccttaacgatatgatggttccgctggagattgtccgcctgacgctgagt
tcgggcagccttcaggtgctggatcatgaacttccgcccagctatcaacccgccgggcag
catgtgcgcctgcgccaccactcggtacggctggtgaagcaccccagcctggtgctgcat
ctgacctggcgcgatcccgtcgatgattacttccattcgctgctgaccacgacgccgctc
tcgctggcgattgcctttatggttatcgtgctggtatttggcgcccgttgggtgaaacgc
cagttttccggcctggagctactggaaagtcgctccacccgaattctgaacggcgaacgg
ggaaaagtagtgcgtggttcgctgcatgagtggccgccgcggaccagtagcgcgatggat
gttctgctgagcgaactgcacaacgccggggagcagcgcagccgtgtggatacgctgatc
cgctcctatgcggctcaggatgcgcagacgggtctgagcaatcgcctgttttttgaaaat
cagctcgccatgttgctggaagataatgaacaggtaggtacccacggcatggtgatgatg
atccgcgtgccggatttcgaaattttgcgcgaaacctgggagcgtcactccgtcgatgac
tacctttataacctgatcaatctgctgtcgacttttgtgatgcgttaccccggcgcgttg
ctggcgcgctatttccacaacgattttgctgttctgctcccgcacagcaccctgaaagaa
gcggacggcattgccagccagttgctgaaatcggtggatgcgatgccgcccacccgtatg
ctggatcccctggatatggtgcatattggtatctgcgcctggcgcggcggtcagagcgtg
gaacaggtgatggagcatgccgaagcggcggtacgcaatgccgtgctccagggcagcaac
agttgggcggtctatgatgacaagctgccggaaaaaggccgcggcaatgtgaagtggcgt
actatgctggaagatgccctgcgtcgcggcgggccgcgtctgtatcagaaaccttcagtg
ctgcgtagcggtgaagtgcatcaccgggaaatggccgggcgcatcttcgacggcgagact
gaggtgacgtcggcggagtatatgccggtggttcagcaacttggtttagcggagcagtat
gaccgccagatgatctcccgcatgattccgctattgcgtttctggccggaagagaccctg
gcttttccggtcaccgtggagtcgctgctgcgccgtccatttcaacgctggctgcgcgat
actttgatgcagtgtgaaaaatcgataagaaatcgaattctttttgaacttgctgaggca
gatgtttgtcaatacatcagccgtttacagccgatcgtcaggctgattaaagtactgggg
gctcgggtggccattacgcaggcgggattgaccgtggtaagtacgacttatctccaggat
ttggacgcggaaattctcaaactgtatcctgggctggtcaggaatattgacaagcgtact
gaaaatcagttgtttgttgagagcctggtggaagcctgcaagggaacgcgtaccatggtt
tttgctaccggtacgcgaacccgtggagaatggcagacgctgatcgagaaaggggtgagt
ggcgcacagggtgaattctttgtcggttcagagcctcttgacagcaatgtgaaaaaatat
tcacgtagatatccggtttag
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