Jejubacter calystegiae: FEM41_06990
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Entry
FEM41_06990 CDS
T05975
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
izh
Jejubacter calystegiae
Pathway
izh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
izh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FEM41_06990 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
izh03021
]
FEM41_06990 (rpoC)
03400 DNA repair and recombination proteins [BR:
izh03400
]
FEM41_06990 (rpoC)
Enzymes [BR:
izh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FEM41_06990 (rpoC)
Transcription machinery [BR:
izh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FEM41_06990 (rpoC)
DNA repair and recombination proteins [BR:
izh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FEM41_06990 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
QCT19412
UniProt:
A0A4P8YLP7
LinkDB
All DBs
Position
1515967..1520190
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKAMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKINAKGEGMVLTGPKEAERIYRAG
LAELHARVKVRITEYEKDAQGEFVAKTSLIDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISRMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIINEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSRAMMENLQTETVINRDGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLNEQWCEVLEENSVDSVKVRSVVACDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
VNAKTVVNSSEKLVITSRNTELRLIDEFGRTKESYKVPYGAVLAKGDGEPVNAGETVANW
DPHTMPVITEVAGFIRFTDMIDGQTVTRQTDELTGLSSIVVLDSAERTAGGKDLRPALKI
VDANGDDVLIPGTDMPAQYFLPGKAIVQLDDGVQISGGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEIGGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVQAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIMNAGSSEFLEGEQVEYSRVKIANRDLEAEGKISATYMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGETPV
VPQVSAEEASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcctggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaagccggaacgtgacggtctgttctgcgcccgc
attttcgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgcggcgttatctgtgaaaaatgtggtgttgaagttactcagaccaaagtacgtcgtgag
cgtatgggtcacattgagctggcttctccgaccgcgcacatctggttcctgaagtcgctg
ccgtcccgtatcggtctgctgctggatatgccgctgcgcgacattgagcgcgtgctgtac
ttcgaatcctatgtggttatcgaaggcggtatgaccaacctggaacgtagccagatcctg
actgaagagcagtatctggatgcgctggaagagttcggtgacgaattcgacgccaagatg
ggtgccgaagcgatccaggcgctgctgaaagcgatggatctggagcaggagtgtgaaacc
ctgcgcgaagagctgaatgaaaccaactcagaaaccaaacgtaagaagctgaccaagcgc
atcaagctgctggaagccttcgtacagtccggcaacaagccggagtggatgattctgacc
gttctgccggttctgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacttccgatctcaacgatctgtatcgccgtgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccggatatcatcgtacgcaacgaaaagcgtatgctgcag
gaagcggtcgacgccttgctggataacggtcgtcgcggtcgcgccatcacgggctctaac
aagcgtccgctgaaatctctggccgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactactccggtcgttccgttatcaccgtaggtccgtac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaagccgttc
atctacggcaagctggagctgcgtggccttgctaccacgatcaaagcggccaagaaaatg
gtcgagcgcgaagaagcagtagtatgggatatcctggatgaagttatccgtgagcacccg
gtactgctgaaccgtgcgccgaccctgcatcgtctgggtatccaggcgttcgagccggta
ctgatcgaaggtaaagctattcagcttcacccgctggtgtgtgcggcgtacaacgccgac
ttcgatggtgaccagatggcggtacacgttccgctgaccctggaagcccagctcgaagct
cgtgcgctgatgatgtctaccaacaacatcttgtcgccggcgaacggtgagccgatcatc
gtaccgtctcaggacgtggttctgggtctgtactacatgacccgtgacaagattaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaggctgagcgtatttatcgcgctggc
ctggctgagctgcacgcccgcgttaaggtacgtatcactgagtatgaaaaagatgctcag
ggtgagttcgtggccaaaaccagcctgatcgacaccaccgttggtcgtgcgatcctgtgg
atgatcgtgccgaaaggcctgccgttctccatcgtcaaccaggcgctgggtaagaaagcg
atctccaggatgctgaacacctgttaccgcatcctgggcttgaagccgaccgttatcttc
gctgaccagaccatgtataccggctttgcctatgcagcacgttctggtgcttccgttggt
atcgacgatatggttatcccggctaagaaagccgagatcatcaatgaagcggaagctgaa
gtggcggaaattcaggagcagttccagtctggtctggttaccgctggcgaacgctacaac
aaagttatcgatatctgggcagcggccaacgaccgcgtatcccgcgcgatgatggaaaac
ctgcagaccgaaaccgttatcaaccgtgacggtgaagaagagcagcaggtctccttcaac
agcatctatatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcgacccacggtgctcgt
aaaggtctggcggataccgcactgaaaacggcgaactccggttacctgactcgtcgtctg
gtcgacgtggcgcaggatctggtggtcaccgaagacgactgtggtacccacgaaggtatc
ctgatgacgccggttatcgaaggtggtgacgttaaagaaccgctgcgcgaccgcgttctg
ggtcgtgtgaccgcggaagacgtgctgaagccgggtactgcagatattctggtaccgcgc
aacacgctgctgaacgaacagtggtgtgaagtgctggaagagaactctgtcgacagcgtg
aaagtgcgttctgttgttgcctgtgacaccgacttcggcgtctgcgcccactgctacggt
cgtgacctggcacgtggtcacatcatcaacaaaggtgaggccatcggcgttatcgcagca
cagtccatcggtgagccgggtactcagctgaccatgcgtaccttccacatcggtggtgcg
gcatctcgtgcggcagctgaatccagcatccaggtgaagaacaaaggtagcctgaaactg
gttaacgccaagacggttgtgaactccagcgaaaaactggtgatcacctctcgtaacacc
gaactgcgtctgatcgacgaattcggccgtaccaaagagagctataaagtgccttacggt
gcagtactggcgaagggcgatggcgaaccggttaacgcgggcgaaaccgtggcgaactgg
gatccgcacaccatgccggttatcaccgaggtggctggtttcatccgcttcaccgacatg
atcgacggccagaccgtaacgcgtcagaccgacgaactgaccggcctgtcctccatcgtg
gttctggattccgcagagcgtacggcgggtggtaaagatctgcgtccggcactgaagatc
gttgacgctaacggcgacgacgtattgattccgggcaccgacatgccggcacagtacttc
ctgccgggtaaagcgattgttcagctcgacgatggtgtacagatcagcggcggtgacacc
ctggcgcgtattccgcaggaatctggcggtaccaaggatatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcacgtcgtccgaaagagccggcaatcctggcagaaatcggc
ggtattatctccttcggtaaagagaccaaaggcaagcgccgtctggttatcacgccggta
gacggtagcgatccgtacgaagagatgattccgaagtggcgtcagctgaacgtgtttgaa
ggtgagcgcgtagagcgtggtgacgtggtttctgatggtccggaagcaccgcacgatatt
ctgcgtctgcgtggcgttcaggccgtgactcgctacatcgttaacgaagtgcaggacgta
taccgtctgcagggcgttaagatcaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagcgaccatcatgaatgcgggcagctccgagttcctggaaggtgagcaggtg
gaatactcccgcgtcaagatcgccaaccgcgatctggaagccgaaggcaaaatcagcgcg
acttacatgcgcgatctgctgggtatcaccaaagcgtctctggcgactgagtccttcatc
tccgcggcatcgttccaggagaccactcgcgtgctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgttatcgtaggtcgactgattccggcgggt
actggctatgcctaccaccaggatcgtatgcgtcgtcgcgcggctggcgaaacgccggtt
gtgccgcaggtcagcgcggaagaagcttccgccagcctggcagaactgctgaatgcaggt
ctgggcggctccgacaacgagtaa
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