Jejubacter calystegiae: FEM41_09890
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Entry
FEM41_09890 CDS
T05975
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
izh
Jejubacter calystegiae
Brite
KEGG Orthology (KO) [BR:
izh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
izh03019
]
FEM41_09890 (hrpB)
Enzymes [BR:
izh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FEM41_09890 (hrpB)
Messenger RNA biogenesis [BR:
izh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FEM41_09890 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
HA2_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCT19939
UniProt:
A0A4P8YGZ5
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All DBs
Position
2149130..2151556
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AA seq
808 aa
AA seq
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MSTLPVAAVLPELLTALRNKPQTLLIAPTGAGKSTWLPLLLLREMPAGRILLLEPRRLAA
RNVAQRLAEQLGEQPGETVGYRMRAETCVGPNTRLEVVTEGILTRMIQRDPELSGISLVL
LDEFHERSLQADLALALLLEIQQGLRDDLKLLIMSATLDDRRLSQLLPEAPVVVSEGRSW
PVERRYQGLPVHQRFDEAVAIATAQLLREESGSLLLFLPGVGEILRVQEQLRERVPRDVM
LCPLYGALPLSEQRRAILPAPPGQRKVVLATNIAETSLTIEGIRLVVDSAQERTAKFDPR
SGLTRLITQRISQASMTQRAGRAGRLEPGICLHLVAADQAERAAAQGQPEMMQSDLSGLL
LELCLWGCTDVAQMSWLDKPPEPNLAAARRLLQQLGALDEQERLTVQGRRMAQLGLDPRL
AAMLVAAATPDERSTAAQLAAILEEPPRGDGALNDALTKPQGNWRARARQLLKRIQGEAG
SCDPELAPGLLARGFADRIALRRGQQGRYLLANGMGATLEPDSPLTRHEWLLAPLLLQGA
SSPDARILQALPVDPERLAAEVPGLLSQSDSVEWDEGPGTLKAWRRWRIGDLTVRRQPLN
RPDENQLHQAILNGIRDKGLSLLNWSEAAQQLRLRISCAARWLPEHPWPKVDDETLLATL
EQWLLPQMGGVKSLQALKNLDLCQGLYSLLDWSLRQRLDSALPTHYTVPTGSRIAIRYDA
DNPPALAVRMQEMFGEATTPSIAEGRVAMVLELLSPAHRPLQITRDLAAFWGGAYREVQK
EMKGRYPKHVWPDSPATAQPTRRTKRHQ
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
gtgtccacattacccgttgcggcggtcctgccggaactgctcaccgcgctgcggaacaag
cctcaaacgctgttgattgcccctaccggcgccggtaaatccacctggctgccgctcttg
ctgctgcgcgagatgcccgccgggcgcattcttctgctggagccgcgacggctggcagcc
cgcaatgtggcccagcgcctggcggaacagttaggcgaacagccgggcgaaaccgtgggt
taccgcatgcgtgcggaaacctgcgtggggccgaacacccggctggaggtggtgaccgaa
gggatcctgacccgcatgatccagcgcgatccggaactgagcggtatttccctggtgctg
ctggacgaattccacgaacgcagcctgcaggccgatctggcgctggcgctactgctggag
atacagcaggggctgcgtgacgatttaaagctgctgattatgtcggcaaccctggacgac
cggcgcctgagccagctattgccggaggcgccggtggtggtttccgaaggacgaagctgg
ccggtggaacgccgttatcaggggctgccagtccaccagcgtttcgacgaagcggtagcc
atcgccactgcgcaattactgcgtgaagagtcgggatcgctgttgctgttcctgccgggc
gtaggcgagatcctgcgcgtgcaggagcaactgcgcgaacgagtgccccgggatgtgatg
ctctgcccgctgtatggcgcgctgccgttgagtgagcagcggcgcgcgattttgcccgcg
ccgcctggccagcgcaaagtggtgctggcgaccaatatcgccgaaaccagtctgaccatt
gaagggatccgtctggtggtggatagcgctcaggagcgcaccgcgaaatttgatccgcgc
agcgggctgacccggcttatcacccagcgcattagtcaggcctcgatgactcagcgcgcc
ggtcgtgccgggcgcctggaaccggggatctgcctgcatctggtggcggcagatcaggca
gagcgcgctgccgctcaggggcaaccggaaatgatgcagagcgatctttccggtttattg
ctggagctctgcctgtggggctgtaccgatgtggcgcagatgagctggctggacaagccg
ccggaacccaatctggcggcggcgcggcgtctgttgcagcaactgggggctctggatgaa
caggagcgcctgacggtacaggggcgacgtatggcgcaactggggctggatccccggctg
gcggcaatgcttgtggcagcggccacgccggatgaacgcagcaccgcagcacaacttgcg
gcgatcctcgaagaaccgccccgcggcgacggcgctttgaacgatgccctgacgaaaccc
cagggcaactggcgggcgcgggctcggcagttgcttaaacgtattcagggcgaagcgggg
agctgcgatcctgaactggctccgggtctgctggcccgtggttttgccgatcgtatcgcg
ctgcggcgcggccaacaggggcgctacctgctggctaacggcatgggggcgacactggag
ccggattctccgctgactcgccacgaatggctgctggcgccgctactgcttcagggggcc
agctcgccggatgcccgcattctgcaagcgctgccggtggatccagaacggctggcggcg
gaggtacctgggctgctgagtcagagcgacagcgtggagtgggacgaaggtcctggtacc
ctgaaggcctggcgccgctggcgcattggcgacctgaccgtcaggcgtcagccgctgaat
cgccccgatgaaaatcagcttcaccaggcgatactgaacggcattcgcgataagggactg
tccctgcttaactggagcgaagcggcgcagcagctgcggttgcgtataagctgcgccgcc
cgctggctaccggagcatccgtggccgaaggttgatgacgaaacgctactggcgacgctg
gagcagtggctgctgccgcagatgggcggggtaaaatcgctccaggccctgaaaaatctg
gatctctgccagggactttacagcctgcttgactggtcactgcgtcagcggctggatagt
gcgctgccaactcattacactgtgccgaccgggagtcgtatcgccatccgttatgatgcg
gataatcctcctgcgctggcggtacgaatgcaggagatgttcggcgaagcgacgacacct
tcgattgccgaaggacgggttgcgatggtactggagctgttgtctccggcccatcgtccg
ctacagatcacccgcgatctggctgccttctggggcggtgcgtatcgcgaggtgcaaaaa
gagatgaagggtcgctatcccaaacacgtctggccggactccccggcgacggcgcagccc
acccgacgcactaaacgtcaccagtga
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