Jejubacter calystegiae: FEM41_13895
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Entry
FEM41_13895 CDS
T05975
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
izh
Jejubacter calystegiae
Pathway
izh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
izh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FEM41_13895 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
izh03019
]
FEM41_13895 (rhlE)
Enzymes [BR:
izh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FEM41_13895 (rhlE)
Messenger RNA biogenesis [BR:
izh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FEM41_13895 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QCT20655
UniProt:
A0A4P8YIR2
LinkDB
All DBs
Position
3027359..3028729
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AA seq
456 aa
AA seq
DB search
MSFDSLGLSPDILRAVAEQGYREPTPIQRQAIPVVLSGRDLMASAQTGTGKTAGFTLPLL
ELLTQREPHSKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVNLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPPR
RQNLLFSATFSDEIKGLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSLMI
GKGDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKREIPRIAEPGFEPDPSIKAEPIQNGRQGRSGGGRGGNGGGRGNGGGNGGGRGQSQ
GQPRKRAESGQAAKPAGERSGRRRRRGGQGGGEGNR
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattctcttgggctgagccccgatattttgcgcgccgttgccgaacagggc
tatcgcgaacccacccctattcagcgccaggccattcccgtggtgctcagcggtcgcgat
ctgatggccagcgcccagacgggcaccggtaaaaccgcaggctttacgctgccgctgctg
gagctgctgactcagcgcgagccgcacagcaaagggcgtcgcccggtgcgcgccctgatc
ctgacccccacccgtgaactggccgcgcagatcggcgaaaacgtacgcgactacagcaaa
tacctcaacatccgttcgctggtggtgttcggcggcgtaagcatcaacccgcagatgatg
aagctgcgcggcggtgttgacgtgctggtggcgactcccgggcgcctgctcgatctggaa
catcagaacgccgtgaatctggaccaggtggaaatcctggtgctggacgaagccgatcgc
atgctggatatgggctttatccacgatatccgtcgggtactggcgaagctgccgccacgc
cgtcagaatctgctgttttccgccaccttctctgacgaaattaaggggctggcggaaaaa
ctgctgcacaacccggaagaggtggaggtagcgcgccgcaacaccgcttcagagcaggtg
acccagcatgttcactttgtggataagaaacgcaagcgcgagctgctgtcactgatgatt
ggcaaaggcgactggcgccaggtgctggtctttacccgcaccaagcacggcgctaaccat
ctggcggaacagttgaataaagacggtatcaccgccgccgctattcacggtaacaagagc
cagggagcgcgtacccgggcgctggccaactttaagtccggtgatattcgggtgctggtg
gcgaccgatatcgccgcccgcggtctggatattgaagagctgccgcacgtggtcaactat
gagctgcctaacgtgccggaagattacgtgcaccgtattggccgtaccggtcgtgctgcc
gccaccggtgaagcgctgtcactggtctgcgtggatgagcataaactgctgcgtgatatc
gaacgcctgctgaagcgcgaaattccgcgtattgccgagccgggctttgagccggatccc
tccattaaggcggagccgattcagaacggccgccagggacgtagcggcggtggtcgcggc
ggtaatggtggtggtcgcggtaatggcggcggaaatggcggcggacgcggccagagccag
gggcagccgcgtaagcgcgccgaaagcggccaggcggctaagcctgccggtgaacgttcc
ggtcgtcgacgtcgtcgcggcggtcagggcggcggcgaaggtaaccgctaa
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