Jejubacter calystegiae: FEM41_18870
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Entry
FEM41_18870 CDS
T05975
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
izh
Jejubacter calystegiae
Brite
KEGG Orthology (KO) [BR:
izh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
izh03016
]
FEM41_18870
Enzymes [BR:
izh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FEM41_18870
Transfer RNA biogenesis [BR:
izh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FEM41_18870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
OSR1_C
ODP
Motif
Other DBs
NCBI-ProteinID:
QCT21568
UniProt:
A0A4P8YNP5
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All DBs
Position
4078129..4080063
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKGTEKGFGFLEVDANKSYFIPPPQMKKVMHGDRI
RAVIHEDKGRESAEPEELIEPFLTRFVGRVQKKDDRYAIVPDHPLLKDAIPCRPERGLKH
EFKEGDWAVAEMRRHPLKGDRSFYAELTRYITWGDDHYAPWWVTLARHNLEKEAPDGVAT
EMLDEGLTREDLTELPFVTIDSASTEDMDDALYAEQDDRGDLHLTVAIADPTAWIAPGSR
LDKIARERAFTNYLPGFNIPMLPRELSDDLCSLRPDETRPVLACRMSIGADGAIGSDIHF
FAATIQSRAKLVYDEVSDWLEQKGYWQPQDDIIARQITLLHRICQLRGEWRHNHALVFKD
RPDYRFVLDENGYVLDIVAEPRRIANRIVEESMIAANVCAATVLRDRLGFGIYNVHTGFD
PANTEQLATMLKSHGMHVDANEVQTLEGFCKLRRELDAQPTGFLDSRIRRYQSFAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAIVKGESAERPQDEVTVQMGERRRLGRM
AERDVGDWLYSRFLQDKAGTDTRFSAEIIDISRGGMRVRLVDNGAVAFIPAPFLHAVRDE
LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPAS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggataacccgctgctagcgcagcttaaacagcaacttcattctcagacgccg
cgcgctgaaggcgtggtaaaaggtacggaaaagggatttggcttcctcgaagttgacgcc
aataaaagctactttatcccgccgccgcagatgaaaaaagtgatgcacggtgaccgaatc
agagctgtgattcatgaggataagggtcgcgaaagcgccgagccggaagagcttatcgag
ccattcctgacgcgttttgttggccgggttcagaagaaagatgaccgctacgctatcgta
ccggatcatccgctactcaaagatgctatcccctgccgtcctgaacgtggtctgaagcat
gaatttaaagagggtgactgggccgttgcagaaatgcgccgtcatcccctcaaaggcgat
cgcagcttctacgctgaactgactcgttatatcacctggggcgacgatcactacgccccc
tggtgggtgacgctggcgcgccataatctggagaaagaggcgccggacggcgtcgctacc
gaaatgctggacgaagggctgacccgtgaagatctgaccgaactaccgttcgtcactatc
gacagcgccagcaccgaggatatggacgatgcgctctatgctgagcaggacgatcggggc
gacctgcacctgaccgtcgccattgccgatcctaccgcgtggatcgcaccgggtagccga
ctggataagatcgcccgcgaacgcgcctttaccaactatctgccgggattcaatatcccg
atgctgccgcgcgagctttctgacgatctttgctctctgcgccctgatgaaacgcgtccg
gtactggcctgccgcatgagtattggcgccgatggcgctatcggtagcgatattcacttc
tttgccgccactattcagtcccgcgccaaactggtctatgacgaagtttctgactggctg
gagcagaaaggctactggcagcctcaggacgacattatcgcccggcagattaccctactg
catcgcatctgccaactgcgcggggaatggcgccataaccacgcgctggtctttaaggat
cgccctgattaccgctttgttctcgacgaaaacggctatgtactggatatcgtcgccgag
ccgcgtcgtatcgctaaccgtatcgtggaagagtcgatgattgccgccaacgtctgcgcc
gctaccgtgctgcgcgatcgtctgggctttggtatctacaacgtccataccggttttgac
ccggctaataccgaacagctggcgactatgctgaaaagccacggcatgcacgtggacgcc
aacgaggtacagaccctggaaggcttctgcaaactgcgtcgcgagctggatgcccaaccc
accggcttcctggacagccgtattcgccgctatcagtcctttgctgaaatcagcaccgag
ccaggcccgcattttggtctgggtctggaagcttacgccacctggacatcaccgattcgt
aagtatggcgatatgatcaaccatcgcctgcttaaggccatcgtcaaaggtgaaagcgct
gaacgtccgcaggatgaggtcaccgtacagatgggtgaacgtcgtcgtcttggccgtatg
gcagagcgtgatgtcggcgactggctctactcgcgtttcctgcaggataaagccggtacc
gatactcgctttagcgctgaaattatcgatatcagccgcggcggtatgcgcgtacgtctg
gtagataacggcgccgtcgcctttattccggcccccttcctgcacgccgtgcgcgatgaa
ctggtatgcagccaggaaaatggcaccgtacagattaaaggcgaaaccgtctataaggtc
actgacgttatcgatgtcaccatcgccgaagtccgtatggaaacccgcagtattattgct
cgcccggcgagctaa
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