Jejubacter calystegiae: FEM41_18935
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Entry
FEM41_18935 CDS
T05975
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
izh
Jejubacter calystegiae
Brite
KEGG Orthology (KO) [BR:
izh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
izh03032
]
FEM41_18935 (topA)
03400 DNA repair and recombination proteins [BR:
izh03400
]
FEM41_18935 (topA)
Enzymes [BR:
izh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FEM41_18935 (topA)
DNA replication proteins [BR:
izh03032
]
Prokaryotic type
DNA Topoisomerases
FEM41_18935 (topA)
DNA repair and recombination proteins [BR:
izh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FEM41_18935 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QCT21580
UniProt:
A0A4P8YLB4
LinkDB
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Position
complement(4091394..4093994)
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AA seq
866 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSTQKKSADSASTKTARKGK
KDERGALVNRMGIDPWHNWAAHYEVLPGKEKVVSELKALAEKADHIYLATDLDREGEAIA
WHLREVIGGDDTRYSRVVFNEITKNAIRQAFEKPGELNLDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWEVDANLTTPGGENLPVEVTH
QNDKPFRPVTREQTMAAVALLEKARYSVVEREDKPTSSKPGAPYITSTLQQAASTRLGFG
VKKTMMLAQRLYEAGHITYMRTDSTNLSQDALSMARGYIDDNFGKAYLPASPNQYASKDN
SQEAHEAIRPSDVNVVAESLKDMESDAQRLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF
RLRARGRILRFDGWTRVMPALRKGDEDRTLPAVEKGDTLSLVDLIPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEDNFRELMNY
DFTAQMESRLDEVANHQQEWRKVLDNFFDNFSDQLETAEKDPEEGGMRPNQMVLTSIECP
TCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCPKCGTAMDSYLIDPKRKLHVCGNNPACDGYEIEEGEFRIKGYDGPVVECEKCGCEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDQDGNKTVVRFSRKTKQQYV
SSEKEGKATGWSAFFVDGKWVEGKKK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctcggaagtgactacgtggtgaaatccagcgtagggcacatccgtgatttgccgaccagc
ggttcaactcaaaaaaagagcgccgactcagcctccaccaaaacggccaggaaaggcaaa
aaggatgagcgtggcgctctggtcaaccgtatgggtatcgacccctggcacaactgggcg
gcccactacgaagtactgcctggcaaagagaaggtggtgtctgagctgaaagcgctggct
gagaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagtgattggcggcgacgatacgcgttacagccgggtggtatttaac
gaaatcaccaaaaatgcgattcgccaggcgtttgaaaagccgggtgaactgaacctcgac
cgggtcaacgcccagcaggcgcggcgctttatggaccgtgtggtgggttatatggtctcg
ccgctgctgtggaagaaaatagcccgcggcctgtctgccggacgcgtacagtctgtggcg
gtgcgtctggtggtggagcgcgagcgtgaaatcaaagcgttcgtgccggaagagtattgg
gaagtcgatgctaacctgaccacgccgggcggcgaaaacctgccggtggaagtgacgcat
cagaacgataagccgttccgtccggtcacgcgcgaacagaccatggccgcggtggcgctg
cttgaaaaagcacgctacagcgtcgtggagcgcgaagataaaccgaccagcagcaagcca
ggcgcgccttacatcacttccacgctgcagcaggcggccagtacccgtctgggctttggc
gtgaaaaagaccatgatgctggcccagcgtctgtacgaggcggggcatatcacctatatg
cgtaccgactccaccaacctgagtcaggatgcgctgagcatggcgcgcggctatatcgac
gacaatttcggtaaagcgtatctgcctgcatcgccgaaccagtatgcgagtaaagacaac
tctcaggaggcccacgaggccatccgtccgtccgatgtgaatgtcgtggcggagtccctg
aaagatatggagtctgatgctcagcgcctgtatcagctcatctggcgccagtttgtggcc
tgccagatgaccccggcgaagtatgactccaccactctcacggttggggccggtgacttc
cgactgcgggcccgcgggcgcattctgcgcttcgacggttggacccgggtgatgccggcg
ctgcgtaagggcgatgaagatcgcactctgccggcggtcgagaagggcgatacgctgtcg
ctggtggatctgattccggcacagcactttaccaaaccgcctgcgcgttttagcgaagct
tcgctggttaaagagctggaaaaacgcggtattggccgcccgtccacctatgcgtcgatc
atctcgacgattcaggatcgcggctatgtgcgggttgaaaaccgccgtttctatgcggaa
aaaatgggtgaaatcgtgaccgatcgcctggaagataacttccgcgagctgatgaactac
gattttaccgcccagatggaaagccgactcgatgaggtggccaaccatcagcaggagtgg
cgtaaggtcctggataactttttcgacaacttcagcgaccagttggaaactgccgagaag
gatccggaagagggcggcatgcgtccgaaccagatggtcctgaccagcatcgaatgtccg
acctgtagccgtcccatgggaatccgtaccgccagcaccggggtcttcctgggctgttcc
ggttacgcgctgccgccgaaggagcgctgcaaaaccaccattaacctggtgccggaaaac
gaagtactcaacgtactggaaggcgatgatgccgaaaccaacgcgttgcgtgctaagcgt
cgctgcccgaaatgcggcacggcgatggacagctatctgatcgatcctaaacgcaagctg
cacgtctgtggtaataacccggcctgtgacggttacgagattgaagagggcgagttccgc
atcaagggctatgacggtccggtggtggagtgcgagaagtgcggttgtgaaatgcacctg
aaaatgggacgttttggtaagtacatggcctgcaccaacgacgagtgtaagaacacccgt
aagattttgcgtaacggcgaagtggctccgccgaaggaagatccggttccgctgccggaa
ctgccgtgcgaaaaatcagacgcttacttcgtactgcgcgatggtgcggcagggatcttc
ctggcggctaacaccttccccaaatcccgggaaacccgggcgccgctggtggaagagctg
taccgcttccgcgatcgcctgccggagaaactgcggtacctggccgacgcgccgcagcag
gaccaggatggcaacaagacggtggtgcgctttagtcgtaaaaccaaacagcagtacgta
tcgtccgaaaaagagggtaaagcaaccggctggtctgctttcttcgtggatggtaagtgg
gtggaaggtaagaaaaaataa
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