Janthinobacterium sp. B9-8: VN23_04435
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Entry
VN23_04435 CDS
T04271
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
jab
Janthinobacterium sp. B9-8
Pathway
jab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VN23_04435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jab03019
]
VN23_04435
03016 Transfer RNA biogenesis [BR:
jab03016
]
VN23_04435
Enzymes [BR:
jab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VN23_04435
Messenger RNA biogenesis [BR:
jab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VN23_04435
Transfer RNA biogenesis [BR:
jab03016
]
Prokaryotic type
tRNA degradation factors
VN23_04435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AMC33901
UniProt:
A0A109RV49
LinkDB
All DBs
Position
1009871..1012018
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AA seq
715 aa
AA seq
DB search
MFNKIVKSFQYGKHNVTMETGEIARQASGAVLINMDDTVVLVTVVAARDVKPGQDFFPLT
VDYQERTYAAGRIPGGFFKREGRPSEKEILTCRLIDRPIRPLFPEGFYNDIQIIATVMSV
NPEVDPDIVAMLGASAALSISGVPFDGPIGAARVAYINGEYVLCPTLSELKTSQMDLVVA
GTSQAVLMVESEADELSESIMLGAVVFGHEQMQVAINAINELADEANPELFAWDAPVANE
ALVAQVRAVAAAGLSDAFKLRQKQLRTIKINETWALVKAALITEETGTLAANEIKGIFKG
LEAEIVRGQILDGYPRIDGRDTRTVRPITIRSGVLPRTHGSVLFTRGETQAIAVATLGTK
LDEQKIDALAGAYTDRFMLHYNFPPYSTGETGRVGTPKRREIGHGRLAKRALAAMLPSVE
DFGYSMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKNHVAGIAMGLIKEGNRFAVLS
DILGDEDHLGDMDFKVAGTENGITALQMDIKINGITKEIMKVALDQAQEGRAHILAIMKG
TMEGARTEVSEHAPRLYTMKINPEKIRDVIGKGGSVIRALTEETGTQIDIQEDGTITIAS
VSAEGADEAKRRIADITAEVEIGKIYEGPVVKILDNNVGAIVSIMPGKDGLVHISQIANE
RIKNVGDYLKEGQIVRVKVIEQDERGRIRLSIKAVTNEESPVAAEAVVAPVEAAE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgttcaataaaattgtgaaatcattccagtacggtaagcataatgtcaccatggaaacg
ggtgaaattgcccgtcaggcgagtggtgccgttctgattaatatggacgataccgttgtt
ctcgtgacggttgtagccgcgcgtgacgttaagccaggtcaggatttctttccgctgacc
gttgattaccaagagcgtacttacgctgctggtcgtatcccaggtggtttctttaaacgt
gaaggccgtccttccgaaaaagaaattttaacttgccgcctgattgatcgtccgattcgt
cccctgttccctgaaggtttttacaacgacatccagattattgcgacagtgatgtcggtt
aatcctgaagtcgatccagacatcgttgcgatgctgggtgcttctgctgccttgtcgatc
tctggtgtgccttttgatggcccgatcggcgctgcacgcgttgcctatatcaatggtgaa
tacgtactttgcccaaccttgtctgagctgaaaaccagccagatggatctggtggttgcg
ggtacttcacaagctgttctgatggttgaatctgaagcagatgaattgtctgaatccatc
atgctgggcgcggttgtgtttggtcacgagcaaatgcaagtggcgatcaatgcaatcaat
gagctggctgatgaagcaaatccggaattgtttgcatgggatgcacctgttgccaatgaa
gcgctggttgcacaagttcgcgcagtagcggcggctggcttatcagatgcatttaaattg
cgtcaaaagcaattacgcaccatcaagatcaatgaaacttgggctttggttaaagcggcg
ttgattacagaagaaaccggtactctggctgccaacgaaatcaaaggcatctttaaaggt
ctggaagctgaaatcgttcgcggtcagattctggatggctacccgcgtattgatggccgt
gatacacgcacggttcgccctatcaccatccgttctggcgtgttgccacgcacgcatggc
tcggtgctatttactcgcggtgaaacacaagcgatcgcagtggcgaccttgggtactaag
cttgatgagcaaaaaattgatgcattggcaggtgcttacacagatcgctttatgctgcat
tacaacttccctccgtactcgaccggtgaaacaggtcgtgtaggtacaccgaagcgtcgt
gaaattggtcacggtcgtttggctaagcgtgcactggctgcaatgctgccttcggttgaa
gactttggttattcgatgcgcgttgtttcggaaattaccgaatcaaacggttcaagctcg
atggcttcagtttgtggtggttgtctggccttgatggatgcgggcgttccgatgaaaaac
cacgtggccggtatcgccatgggcttgatcaaagaaggcaatcgctttgcagtattgtcc
gatatcttgggtgatgaagatcatttgggcgatatggactttaaagtggcgggtactgaa
aacggtatcaccgcactgcaaatggacatcaagatcaacggcatcactaaagaaatcatg
aaagtggctctggatcaggcacaagaaggccgtgcgcatatccttgccatcatgaaaggc
acaatggaaggcgcgcgcactgaagtgagcgagcatgccccacgcctttacaccatgaaa
atcaatccggaaaaaatccgtgatgtgatcggtaagggtggttcggtgattcgtgcgctg
accgaagaaaccggcacacagattgatatccaggaagatggcacgatcaccatcgcttcg
gtctcggctgaaggtgcggatgaagctaagcgtcgcattgcagacatcacggctgaagtt
gaaatcggcaagatctacgaaggtccagttgttaagattctggacaacaacgtcggcgcg
attgtatcgatcatgccgggtaaagatggtttggttcatatcagccagattgctaacgag
cgcatcaaaaacgtgggcgactacctgaaagaaggccagattgttcgcgttaaagtgatc
gagcaagacgagcgtggccgtatccgtttgtcgattaaagcggtaacaaatgaagagtcg
ccagtggctgctgaagctgttgttgcaccggttgaagccgcagagtaa
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