Janthinobacterium sp. B9-8: VN23_06160
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Entry
VN23_06160 CDS
T04271
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
jab
Janthinobacterium sp. B9-8
Pathway
jab03030
DNA replication
jab03430
Mismatch repair
jab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VN23_06160 (dnaE)
03430 Mismatch repair
VN23_06160 (dnaE)
03440 Homologous recombination
VN23_06160 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jab03032
]
VN23_06160 (dnaE)
03400 DNA repair and recombination proteins [BR:
jab03400
]
VN23_06160 (dnaE)
Enzymes [BR:
jab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VN23_06160 (dnaE)
DNA replication proteins [BR:
jab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VN23_06160 (dnaE)
DNA repair and recombination proteins [BR:
jab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VN23_06160 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HHH_3
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AMC34205
LinkDB
All DBs
Position
complement(1383521..1386958)
Genome browser
AA seq
1145 aa
AA seq
DB search
MNSPSFIHLRLHSEFSVTDGIVRLNDAVKAAKSGGMPALGVSDLMNLFGMVKHYKACREA
GIKPIVGIDAWVENPDDRDTPFRILLICKSRAGYGRLCDLLSNAFRNNQYRGRAELKKEW
LTNGDNSELICLSGAGLGEIGQLLIAGQYDAALTATRWWADTFPDRFYLELQRTGFPTCE
PSVQGHLDLASDLDLPVVATHPVQFMDRDDYKAHEARVCIAEGNMVSDKRRPRLFTEEQY
FKSTAEMAELFADVPQALANSVAIAERCNLSVTLGKNYLPDFPTPDGMTLDDFLVFEAKR
GLETRLQLLYPDEAKRDAERPRYLDRLKFETDTIVQMGFPGYFLIVADFIIWAKHNGCPV
GPGRGSGAGSLVAYSMGITDIDPTAYALLFERFLNPERVSMPDFDIDFCQENRWRVIEYV
REKYGVEAVSQIATFGTMAAKAVVRDVGRVLDLPYMFCDGLSKLIPAAPGKQYSLDDALE
MEPILKQRVENEDEVKELWVLAKKLEGITRNIGMHAGGVLIAPGKITDFCPIYLASGADS
APVSMLDKDDVEKIGLVKFDFLGLRNLTIIELALSYIRDMEGSAPDLMLLGFEDPAAYKI
FRDANTTAVFQVESDGMKRLLAKLKPDRFEDIIAVLALYRPGPLGSGMVDTFINRKNKLE
EVDYFHPDLTACLDPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKNADEMAKHR
EKIAEGAALKGYNPKLAEQLFDLMAKFAEYGFNKSHTAAYAVVSYHTAWLKAHHCAAFMA
ATMSSELDNTDQLKVFYDDSVETNKLILLPPDVNYSFHKFVPVSRREIRYALGAIKGVGE
SAVQMIVRERETHGPFTDLYDFCRRTEKREVNKRTLEALIRAGAFDQIDDHRARLLANVE
QAMALAESESANKNQSSLFDMLEAVDVPQVAIIEAPYWDERVKLAEEKNAVGFYISGHPF
DAHAKGIRQFIKSSLERLEPSRTPQMMTGIVSGLRIKNGDRGRMAFVTLDDGKSRRDVTV
YSEVFEANRNKIKEDTLLVIEGKVSEDRFSGGLRIIADTIYDVAEARSRFARSMTLGMRQ
GMDAQRLKSLLALHRGGECPVEVDYQNTDAACTLSLGESWRITLHDELLAELKSWLGSES
VSVKF
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgccctcctttatccatttacgcctccactccgagttttcagtcaccgatggc
atcgtccgccttaatgatgcggtgaaagcggccaagtcaggcggtatgcctgcacttggc
gtttcggatttaatgaaccttttcggcatggtgaaacactataaagcctgtcgcgaggct
ggaattaaacccatcgtcggtattgatgcttgggtagagaatccagacgaccgggacacc
ccctttcgtatcctgctgatttgcaaaagccgagcaggctatggccgcctttgcgatctg
ctatcgaatgcttttcgtaataaccaatatcgtggtcgtgctgagctaaaaaaagaatgg
ctcacaaatggcgacaatagcgagctaatttgtctatcaggcgcaggattaggtgaaatt
ggccaactcctgattgccgggcaatacgatgcggctctgacggccacgcgctggtgggcg
gacacctttcctgatcgtttctatctggagctgcaacgcacgggctttccaacgtgcgag
cctagcgtgcaaggacacttggatttagcatcggatctggatttacccgttgtggccact
catcctgtgcagtttatggatagggatgattacaaggcacacgaagcgcgtgtttgtatt
gccgaaggcaatatggtgtcggataagcgccgccctcgcctctttaccgaagagcaatat
tttaaatccacggccgagatggccgagctgtttgccgatgtgccgcaagccctcgccaat
agtgtggcgattgccgaacgctgtaatttgtcagttacgcttggcaaaaactacttgccg
gatttccctacgcctgacggcatgacgctggatgattttctggtttttgaagctaaacgc
ggtttagaaacacgattgcaactgctttatccggatgaagccaagcgtgatgccgagcgc
ccgcgttatttagatcgactcaagtttgaaaccgacaccattgtgcaaatgggcttccca
ggttacttcctgatcgttgccgactttattatctgggccaagcacaatggctgtcctgtt
ggccccggccgtggctcgggagcagggtccttagttgcttacagcatgggcattaccgat
atcgaccctacagcttacgccctgctgttcgagcgctttctgaaccctgaacgcgtttcc
atgcccgacttcgatatcgacttttgtcaggaaaaccgctggcgggtcattgaatatgtg
cgcgaaaagtatggcgttgaggcggtcagccagattgctacttttggtacgatggcagcc
aaggctgtggtacgcgatgtgggccgtgtgcttgatctgccctatatgttttgtgatggc
ttatccaagctgatccctgctgcacccggcaagcaatatagcctagatgacgcgctggaa
atggagcccattttaaagcagcgcgttgaaaatgaagacgaagtgaaagagctgtgggta
ctggctaaaaagctggaaggaattacgcgcaatatcggcatgcatgcagggggcgtctta
attgcgcctggcaaaatcaccgacttttgcccgatttacttagcttctggtgcggattcg
gcaccggtttcgatgctagataaagacgacgttgaaaaaattggcttggttaaattcgac
tttttggggctgcgcaacttaaccattattgagctggcattaagttatatccgtgacatg
gaaggcagcgctcccgatttaatgctgctcggttttgaagacccagccgcctataaaatc
tttagggatgccaacaccaccgccgtatttcaggtggaatcggacggaatgaagcggcta
ctggccaagctaaaaccggaccgttttgaagatattattgcggtattggcgctctatcgt
cctggaccattaggctcggggatggtggatacctttattaatcgtaaaaacaagttagaa
gaagtcgattactttcaccctgacctgactgcttgcctcgatcccacttacggtgtgatc
gtctatcaagagcaggtaatgcagatttcgcaaattatcggtggctataccctcggtggt
gcggatatgttgcgccgcgccatgggaaagaaaaacgccgatgaaatggccaagcaccgc
gaaaaaatcgccgaaggtgcagcactaaaaggctacaaccccaagcttgctgagcagcta
tttgacttgatggcgaagtttgccgagtacggttttaataaatcgcacacagcagcttac
gcggtagtttcctaccatacggcctggctaaaagcgcatcactgcgcagcgtttatggct
gccaccatgagctcggagctcgacaacaccgatcagctcaaagtgttttatgacgatagt
gtcgaaaccaataagctgattttattgccacccgacgtgaattacagctttcataaattc
gtgcccgtttcacgcagagaaattcgttacgccctaggtgccatcaagggcgtaggtgaa
tctgccgtgcaaatgattgtgcgcgaacgagaaacccacggtccgtttacggatttatac
gatttttgccgccgtaccgaaaaacgtgaagtcaataaacgtacgttagaagccttgatt
cgtgcgggggcatttgatcagatcgacgatcatcgcgctcgccttttggccaatgtagag
caggcgatggctttggctgaaagcgaatcagccaataaaaatcaatccagcctatttgat
atgcttgaggcggttgatgtgccccaagtggccattattgaagcgccctattgggatgag
cgggtaaagctggccgaagaaaaaaacgcagttggtttttatatttccggccaccctttt
gatgcccatgcaaaaggcattcgccaatttattaaatcgtccttagaacgcttagagcca
agccgcacaccacaaatgatgaccggcattgtaagtggtttaagaattaaaaacggcgat
cgtggccgaatggcttttgtgaccttggatgatggcaaatcacgccgtgatgtcacggtt
tattccgaagtatttgaagctaatcggaacaaaattaaagaagacacgctcttagtgatt
gaaggcaaggtttccgaagatcggttttcaggaggcttacgcattattgcagataccatt
tatgatgttgcagaagcccgcagccgttttgcgcgcagcatgacattgggaatgcgccaa
ggcatggatgcccagcgtcttaaaagcttactggcactgcaccgtggcggagagtgcccc
gttgaagtggattaccaaaatacagacgcagcctgcactctttctttgggtgaaagctgg
agaattacattgcacgatgaattgctggcagaattaaaaagctggctgggaagtgaatca
gtttccgttaagttttaa
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