Janthinobacterium sp. B9-8: VN23_12385
Help
Entry
VN23_12385 CDS
T04271
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
jab
Janthinobacterium sp. B9-8
Brite
KEGG Orthology (KO) [BR:
jab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
jab03016
]
VN23_12385
Enzymes [BR:
jab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VN23_12385
Transfer RNA biogenesis [BR:
jab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VN23_12385
Prokaryotic type
tRNA splicing ligases
VN23_12385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AMC35350
LinkDB
All DBs
Position
complement(2778370..2779590)
Genome browser
AA seq
406 aa
AA seq
DB search
MSNYSQINVENASPIKLWTKGVPLEDEAREQLINTARMPFIFEHLAVMPDVHLGKGSTIG
SVIPTRGAIIPAAVGVDIGCGMMAARTTLMAGDLPDNLAGLRSAIEAAVPHGRTSTRSGR
DKGSWDTPPSTVDAMWGELADGFKQITDKYPRLIKTNNRKHLGTLGTGNHFIEVCLDEEN
RVWFMLHSGSRGVGNAIGTHFIELAQADMRQHIANLPHRDLAYFEEGSQHFDDYVEAVGW
AQDFARRNRAVMMQNVIAAARKEISKPFLADVEAVNCHHNYVQKETHFGAEVLVTRKGAV
SAQKGQLGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRIMSRTKAKKLFTVEDQINATA
HVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEIVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcaattacagccagattaatgtggaaaacgcttcgccaatcaagctctggactaag
ggcgtgccgctggaagatgaggcgcgcgagcagctgattaacactgccagaatgccgttt
atttttgagcatctggccgtgatgcccgatgtgcatctgggtaagggatcgaccatcggt
agcgtgattcctacccgtggggcgattattcctgctgcggtgggggtggatattggttgc
ggaatgatggccgccagaaccacgctgatggcgggggatttgcccgataatctggccggg
ttgcgtagcgccattgaggctgctgtgccgcatggccgtacttcaacaagaagcggccgg
gataaaggatcctgggatacgcctccttccaccgtggatgccatgtggggagagctggcc
gatgggtttaagcaaattaccgataaatatccccgcttaattaaaaccaataatcgtaag
catttgggaacactgggtacaggaaaccactttattgaggtatgccttgatgaggaaaac
cgcgtgtggtttatgttgcactccggatcccgtggggtaggaaatgcgattgggactcac
tttatcgagctggctcaggccgatatgcgccagcatattgccaacttgccgcaccgcgat
ctggcttattttgaggaaggcagccagcactttgatgattatgtggaagctgtgggttgg
gcgcaggattttgcccgccgtaaccgtgcggtgatgatgcaaaacgtgattgcggctgcg
cgaaaagagatcagcaagccctttctggccgatgtagaggcggtaaattgccaccataac
tatgtgcaaaaagaaacgcattttggtgcagaggtgctggtgacgcgtaaaggggcggtt
tcggcgcaaaaaggccagttggggattattccgggatcgatgggggccaaaagctttatt
gttcgcggcctgggaaatgaagaggctttttgttcctgcagccacggcgccgggcgaatt
atgagcagaaccaaggccaagaagctgtttacggtggaagaccaaatcaatgccactgca
catgtggaatgccgtaaagatgcagaggtgattgacgagattcctatggcttacaaagat
atcgacgcggtgatggccgcgcagtctgatctggtagaaattgtgcataccctgcgccag
gtggtttgtgtgaagggataa
DBGET
integrated database retrieval system
