Janthinobacterium sp. B9-8: VN23_14240
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Entry
VN23_14240 CDS
T04271
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
jab
Janthinobacterium sp. B9-8
Pathway
jab03420
Nucleotide excision repair
jab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VN23_14240
03430 Mismatch repair
VN23_14240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jab03400
]
VN23_14240
Enzymes [BR:
jab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VN23_14240
DNA repair and recombination proteins [BR:
jab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VN23_14240
MMR (mismatch excision repair)
Other MMR factors
VN23_14240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
PcrA_UvrD_tudor
AAA_30
DUF8203
PcRGLX_2nd
DUF2683
DUF3553
Motif
Other DBs
NCBI-ProteinID:
AMC35692
LinkDB
All DBs
Position
3176168..3178294
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AA seq
708 aa
AA seq
DB search
MPHPLTEKLNPEQAAAVELPPEHALILAGAGSGKTSVLTTRIAWLLSTGQCSPAGLLSVT
FTNKAAKEMLVRITSMMPLNPRGLWVGTFHGLCNRMLRLHWRDAGLPEAFAILDSAEQLS
AIKRILKALNIDDEKYPAKVVQQYINGHKENGRRASDVDAWDDYSRMLRLIYEEYEKQCQ
REGVADFSELLLRCYELLSKNESLREHYQSRFRHILVDEFQDTNKLQYAWLKLLAGQNNA
LFAVGDDDQSIYAFRGANVGNMHDFQSDFAVKHVIRLEQNYRSQGNILEAANAVISNNRS
RLGKELWTSEPAGEPIRVFEAATDFEEAAFIVEEAQTLIREGNHANDIAILYRANAQSRV
IEHALFTAGVPYRVYGGLRFFERQEIKHSLAYLRLIANPSDDNALLRVINFPTRGIGART
IESIQENARNAGTSLWQAACSGGAGRGAAAVKKFAETIESMRSQATGLAMPELVDMMLDL
SGLRAHYQADKEGEERLANLGELINAATNFVQEDENNLIAFLSHASLEAGDHQAGAHEEA
LQLMTVHASKGLEFHAVFLCGLEEGLFPHDNSMNDASAVEEERRLMYVAITRARRRLYIT
LAQSRMLHGQTRYAVASRFMQEIPQQLLKFLNRGYAPQGYSGPATLTSKIKAPTPEHGLA
IGMNVAHPKFGKGVVTDHEGGSSGNVQVNFAEAGSKWLAVAYAKLTVL
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgccgcatcccctcaccgaaaaacttaatccagaacaagccgccgccgtagaattaccg
ccggaacacgcgctcatcctggccggtgcaggcagcggcaaaacaagcgtgctcaccaca
cgtattgcctggcttttatccaccgggcaatgcagcccggccggtttattgtcagttact
tttaccaataaagccgccaaagaaatgctggtacgtattacctccatgatgccgcttaat
ccgcgtggattatgggttggcacatttcatggcttatgtaatcgaatgctgcgtttacat
tggcgggatgccggcttacccgaagcttttgcaattttagattctgccgagcagctttca
gcaattaagcgaatattgaaagcattaaatattgatgatgaaaaatatccggcaaaagta
gttcagcaatatattaatggtcataaagaaaatggccggcgcgcaagtgatgtagacgct
tgggatgattattcgcgcatgctgcgattaatttatgaagaatatgagaaacaatgccaa
cgggaaggtgtagctgatttctctgaattattactacgctgttacgaattactttctaaa
aacgaatctttacgtgagcattatcaaagtcgtttccgccacattttagtcgatgaattt
caagacaccaataaactgcaatatgcttggttaaagcttttagccggccagaataatgcg
ttatttgctgttggcgatgatgaccaatccatttatgcattccgtggcgcaaatgtcggc
aatatgcatgattttcaaagcgatttcgccgttaaacatgtgattcgcttagagcagaat
taccgctcgcaaggcaatatcttagaagcagccaatgccgttattagtaataaccgcagc
cgcttaggcaaagaattatggaccagcgaacctgctggcgagccaattcgggtttttgaa
gccgcaacagattttgaagaagccgcatttattgtagaagaagcgcaaacactgatcaga
gaaggcaatcacgccaatgacattgcgattctttatcgtgccaacgctcaatcacgcgta
attgagcacgccttatttactgcgggcgtaccttatcgggtttatggggggttacgcttt
tttgaacgccaagaaattaagcattctttagcttatttgcgcttaattgctaatccaagc
gacgataatgccttgctacgcgtcatcaattttccgactcgtggcatcggtgcgcgcacc
atcgaaagcattcaagaaaacgcccgcaatgcaggcaccagcctctggcaagcagcctgc
tctggcggcgctggccgcggggccgcggcagttaagaaattcgccgaaaccatcgaaagt
atgcgatcccaagccaccggccttgccatgcccgagctggtggatatgatgctcgatcta
tctggcttacgcgcgcattaccaagcagataaagaaggcgaggagcggcttgccaacttg
ggtgagttgattaatgccgccaccaattttgtgcaagaagacgaaaacaacctcatcgcc
ttcttgtcgcatgccagcttagaagcgggagatcatcaagcaggcgcgcacgaagaagcg
ctccagctgatgacggtacacgcctccaaagggctggaatttcatgcggtatttttatgc
ggccttgaagaaggcttattcccgcacgacaacagcatgaatgatgccagcgcggtggaa
gaagaacgccgcctgatgtatgtggcgattacacgcgcccgccgccgcctttacatcacc
cttgcgcaaagccgtatgctgcatgggcaaacgcgctatgccgtcgccagccgctttatg
caagagattccgcagcaactattaaaattcttaaatcgcggttatgccccgcaaggttat
tccggccctgccacgctcaccagcaaaattaaagctcctacgccagagcatggcttggcc
atcggcatgaatgtagcgcatccaaaatttggtaaaggcgtggttaccgatcatgaaggc
ggctcaagcggcaatgtgcaggtgaattttgcggaggcaggctctaaatggctggcggtg
gcttatgccaaactaaccgtactctaa
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