Janthinobacterium sp. B9-8: VN23_15575
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Entry
VN23_15575 CDS
T04271
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jab
Janthinobacterium sp. B9-8
Pathway
jab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VN23_15575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jab03021
]
VN23_15575
03400 DNA repair and recombination proteins [BR:
jab03400
]
VN23_15575
Enzymes [BR:
jab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VN23_15575
Transcription machinery [BR:
jab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VN23_15575
DNA repair and recombination proteins [BR:
jab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VN23_15575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
OPA1_C
Motif
Other DBs
NCBI-ProteinID:
AMC35921
UniProt:
A0A0X8GPK2
LinkDB
All DBs
Position
complement(3441369..3445568)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKGLLELFKQVAANEEFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRDRMGHIELASPVAHIWFLKSL
PSRLGMVLDIPLRDIERVLYFEGFVVIEPGMTPLTRGQLLTEEDYFNKVEEYGDEFVALM
GAEAVRELLKSMDVEDQITTLRAELSSTGSETKIKKISKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKLMGLELFKPFIFHKLEVLGLATTIKAAKKMVEAQDPVVWDILEDVIREHP
ILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRERINAKGEGMYLIDVSEAMRAYASK
EVTLQTRVDIRLKEWVKDEDGEWQAQMVRRSTTVGRAILSEILPKGLDFSHIDKALKKKE
IGKLINASFRRCGLKDTVIFADQLMYTGFAYSTRGGISICVDDMVVPDKKVQLLAESYAE
VREIEHQYSSGLVTQGERYNKVVDIWGRAGDQIAKAMMDQLGKEKVINREGVEVDQDSFN
SVFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLTVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTKNGVVMKAVVQGGDVIEALRDRIL
GRVVVLDVIDPVTHETVFPVGTLLGEDEVEEIEHLGVDEVKVRTPLSCETRYGLCAACYG
RDLGRGHLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAATQVESKSSGNIAY
SPNMRYVTNAKGDPVVIARSAEVIVVDDNGRERERHKVPYGATLTVKDGDSIKAGGVLGT
WDPHTRPIISEYAGQVKFDNVEEGITVMKQVDDVTGLSTLVVIDPKRKGGKATGVRPMVK
LLDERGGEVKMAGTDTTVMIGFQVGCIITVKDGQVVGVGDVLARIPQESAKTRDITGGLP
RVAELFEARIPKDPGMLAEITGTVSFGKETKGKQRLVLTDLEGAPHEYLILKEKHVLVHD
GQVVNRGESIVDGAIDPHDILRLQGIEALSRYVVQEVQEVYRLQGVKINDKHIEVILRQM
LRRVIITDSADSAFIQGEQVERAEVLTVNDKLIAEGKLPASYDNVLLGITKASLSTDSFI
SAASFQETTRVLTEAAIMGKIDDLRGLKENVIVGRLIPAGTGLAYHRNRKRQAPVVDQLA
DIFAPTAEAETAASGEVGV
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcttactcgaactcttcaagcaagttgctgcaaatgaagaatttgatgcgatt
aagatcggtctggcgtcgccagaaaaaatccgctcttggtcgttcggcgaagtaaaaaag
ccggaaaccattaactaccgtacatttaagccagaacgtgatggcttattttgcgcgcgt
atttttggcccaatcaaagattacgaatgcctgtgcggtaagtacaaacgcctgaagcat
cgtggcgtgatctgcgagaagtgcggtgtggaagtgaccctgtctaaggttcgtcgcgac
cgcatgggacacatcgagctggctagcccagttgcacacatctggttcttgaaatccctg
ccatcgcgcttgggtatggtgcttgatatcccattgcgtgatatcgaacgcgtactttac
ttcgaaggttttgtggtgatcgagccaggcatgacgccgctgacacgtggccaattgctg
actgaagaagattacttcaataaagttgaagagtacggtgacgaattcgtagccctgatg
ggtgcggaagcggtgcgtgagcttttgaagagcatggatgtagaagaccaaatcaccacc
ttgcgtgctgaattgtcctccaccggctctgaaactaaaatcaagaagatttccaagcgc
ctgaaagtgctggaagccttccaacgttccggcatcaagccagaatggatggttttggaa
gttctgcctgtattgccgccagaattacgtcctctcgtaccattggatggtggtcgtttc
gctacttcagatctgaacgatctgtatcgtcgcgtgattaaccgtaataaccgtctgaaa
cgtcttttagaattgcgcgcgcctgaaattatcgtgcgtaatgaaaagcgtatgttgcaa
gaagcggttgattccttgctcgataacggccgtcgcggtaaagcgatgacgggtgcgaac
aagcgtcctctcaaatccttggccgatatgatcaagggtaagggcggtcgtttccgtcag
aacttgttgggtaagcgcgtagattactctggtcgttcggttattaccgtgggcccgaca
ctgcgtctgcatcagtgcggcttgccaaaactgatgggtctggagctgttcaagccattt
attttccacaagcttgaagtgcttggtcttgcgaccaccattaaagcggcgaaaaaaatg
gtggaagcccaagatccagtcgtttgggacatcttggaagatgtgattcgcgaacatccg
attctcttgaaccgtgcgccaacacttcaccgcttgggtattcaagcgtttgagccagtg
ttgatcgaaggtaaagcgattcaactgcatccactcgtctgcgcggcattcaatgccgac
tttgacggtgaccagatggctgttcacgttccactgagccttgaagcgcagatggaagca
cgcaccttgatgctggcttctaacaacgtattgtcgccagctaacggcgagccaattatc
gttccttcgcaggatatcgtgctgggtctgtattacatgactcgtgagcgtatcaatgcc
aagggcgagggcatgtacctgatcgacgtaagcgaagcaatgcgcgcttatgcgagcaag
gaagtaaccttgcaaacgcgtgttgatatccgcctgaaagaatgggtaaaagacgaagac
ggcgaatggcaagctcagatggtgcgtcgtagcaccacagttggtcgtgcgatcttgtct
gaaattctgcctaagggtttggacttcagccacatcgataaagcgttgaaaaagaaagaa
attggtaagctgattaacgcttcattccgccgttgcggtctgaaagataccgttattttt
gcggatcaactgatgtacaccggttttgcttattcgacacgcggcggtatctcgatttgc
gttgatgatatggttgtgccggataaaaaggttcagcttctggctgagtcttacgctgaa
gtgcgcgagatcgagcatcagtacagctccggtctggtgactcagggtgaacgttataac
aaggttgtggatatctggggccgtgccggtgatcagattgccaaggcgatgatggatcag
ctcggtaaagagaaggtcatcaaccgcgaaggcgttgaagtcgatcaagactcgtttaac
tcagtatttatgatggccgattccggtgcccgcggttctgcagcgcagattcgtcagctg
gctggtatgcggggtttgatggctaaaccggacggttcgattattgaaacgccgattacc
accaacttccgtgaaggcttgaccgttcttcagtactttatctccacccacggtgcacgt
aagggtctggcagatacggcgctgaaaacagcgaactcgggttacctgactcgtcgtctg
gttgacgtaacgcaagacttggttgtgattgaagacgattgcggcaccaagaacggcgtg
gtcatgaaggcggttgtacagggtggtgatgtgattgaagcactgcgtgatcgtattctg
ggtcgcgtggtagtgctcgatgtgatcgatcctgttacgcacgaaacagtgttcccagtg
ggtacattgctgggtgaagacgaagttgaagagatcgaacaccttggtgttgacgaggtt
aaggttcgtactccgctatcttgcgaaacacgttatggcctatgtgccgcgtgttacggt
cgtgaccttggtcgtggtcatctggtgaatacgggtgaagcagtgggtgttatcgctgct
cagtcgattggtgagccaggtacacagctgaccatgcgtaccttccacatcgggggtgcg
gcttctcgtgcggctgcggcaacacaagtagaatcgaaatccagtggtaatatcgcgtac
agcccgaacatgcgctatgtgaccaatgccaagggtgatccagttgtgattgcacgttct
gctgaagtgattgttgttgatgacaatggtcgtgagcgtgagcgtcataaagtgccgtat
ggtgcaacactgactgttaaagatggcgatagcatcaaagccggtggcgtactgggtacg
tgggatccgcacactcgtccaattatttcggaatacgccggtcaggtgaagttcgataat
gtggaagagggtattaccgtaatgaagcaggtcgatgatgtgaccggtctttcgaccttg
gttgttatcgatcctaagcgtaaaggcggtaaggcaactggcgtacgtccaatggttaag
ttattggatgaacgtggtggcgaagttaaaatggcgggtactgacactaccgttatgatc
ggtttccaagtgggttgtattatcacggtgaaagatggtcaagtggttggtgtgggtgat
gtgttggcgcgtattccacaagaatctgctaagactcgcgatattaccgggggtctgcca
cgtgttgctgagttgtttgaagcgcgtattccgaaagatccgggtatgttggctgaaatt
accggtacagtttccttcggtaaagaaactaagggtaaacagcgtctagtcttaacggat
ctggaaggtgcgccgcacgaatacctgatcttgaaagaaaaacacgtactggttcacgat
ggtcaggttgttaaccgtggtgaaagtattgtggacggtgcgattgatccgcacgatatc
ttgcgtctgcaagggatcgaagcgttgtcacgctacgttgtacaagaagtgcaggaagtg
tatcgtttgcagggtgtaaagattaacgataagcatattgaagttattcttcgtcaaatg
ttacgtcgtgtcatcattactgattctgcagattctgccttcattcagggtgagcaagtt
gagcgcgcagaagtactgacagtgaacgataagttgattgctgagggtaagttaccagca
agctacgataatgttctgttaggtattactaaagcatctctgtctacagattcgtttatt
tcagcggcttccttccaggaaaccacgcgagtgctgactgaagcagccatcatgggcaaa
attgatgacttgcgcggtctgaaagaaaacgtcatcgtaggtcgcttgattcctgcgggt
actggcttagcttaccatcgtaatcgtaagcgtcaggcaccagttgttgatcaattggct
gacatttttgcaccaactgcagaggctgaaaccgctgcaagtggtgaagttggggtctaa
DBGET
integrated database retrieval system
