Janthinobacterium aestuarii: OPV09_09985
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Entry
OPV09_09985 CDS
T11009
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jae Janthinobacterium aestuarii
Pathway
jae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OPV09_09985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jae03019
]
OPV09_09985
Enzymes [BR:
jae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OPV09_09985
Messenger RNA biogenesis [BR:
jae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OPV09_09985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
HI1480
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WWO48406
LinkDB
All DBs
Position
complement(2205497..2206867)
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AA seq
456 aa
AA seq
DB search
MSFSSLGLSDAIVRAVTEHGYTVPTPIQSQAIPAVLAGGDLLAGAQTGTGKTAGFTLPVL
HRLSTDANGASITSNTSTRPIRALILAPTRELAAQVEESVRAYSKYTKLNSTVIFGGVGI
NPQIKQLKHGVDILVATPGRLLDHMGQGTVDLSKVEILILDEADRMLDMGFIRDIKKVLA
VLPPKRQNLLFSATFSEEIKALADGLLNKPAMIEVARRNSTVEVIKQKIHPVDRDKKHPM
LSYLIKSNNWTQVLVFTRTKHGANKLVEQLGADGIGALAIHGNKSQSARTRALSEFKDGT
LQVLVATDIAARGIDIDQLPHVVNYDLPNIPEDYVHRIGRTGRAGAKGEAVSLVCVDEHE
MLKDIEKLIKQTLPREVIEGFEPDLNARAQPVQLRSGTGGHRNNSRAPAGAVVRVKTGGS
GAKPRSAGPSGGGGGGNRSGNAPRSAASHRSGGRGR
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttcctccctcggattgtccgacgctatcgtacgtgccgttaccgaacacggc
tacaccgtgccgaccccgatccagtcgcaggcgattcccgccgtgctggctggcggcgac
ttgctggccggtgcacaaaccggtaccggcaagacggccggcttcaccctgcccgtgctg
caccgcctgtcgacggacgccaatggcgcatccatcaccagcaacacctcgacgcgccct
atccgcgccctgatcctggccccgacgcgcgaactcgccgcgcaggtcgaggaaagcgtg
cgcgcctacagcaagtacaccaaattgaactcgaccgtgattttcggcggcgtcggcatc
aacccgcaaatcaagcagctcaagcatggcgtcgacatcctcgtcgccacgccgggccgc
ttgctggaccacatgggccagggcacggtcgacctgtcgaaagtggaaatcctgattctc
gacgaagccgaccgcatgctcgacatgggtttcatccgcgacatcaagaaagtgctggca
gtactgccgccaaaacgccagaacctgctgttctcggccacgttctcggaagagatcaag
gccctggccgacggcttgctgaacaagccagccatgatcgaagtggcgcgccgcaattcg
accgtggaagtgatcaagcaaaagatccatccggtcgaccgcgacaagaagcacccgatg
ctgtcctacctgatcaagtcgaacaactggacgcaagtgctggtatttacgcgcaccaag
catggcgccaataaactggtcgaacagctgggcgcggacggcatcggcgccctggccatc
cacggcaacaagagccagtcggcgcgcacgcgcgcgctgtccgagttcaaggatggcacc
ttgcaagtgctggtcgccaccgacatcgccgcgcgtggtatcgatatcgaccagttgccg
cacgtcgtcaactacgacttgccgaacattccggaagactatgtgcaccgtatcggccgc
acgggccgtgccggcgccaagggcgaagccgtgtcgctggtctgcgtggatgagcacgaa
atgttgaaagacatcgaaaagctgatcaagcaaaccctgccgcgcgaagtcatcgaaggc
ttcgagcccgacctgaacgcccgcgcccagcctgtgcaattgcgcagcggcaccggtggt
caccgcaacaacagccgcgcgccagcgggcgccgtcgtgcgcgtgaaaactggcggcagc
ggcgccaagccacgcagcgccggcccatcgggcggtggtggcggcggtaaccgcagcggc
aatgcgccgcgttcggcagcatcgcaccgttccggcggtcgcggccgttaa
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