Janthinobacterium aestuarii: OPV09_11230
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Entry
OPV09_11230 CDS
T11009
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
jae Janthinobacterium aestuarii
Pathway
jae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OPV09_11230 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jae03019
]
OPV09_11230 (rnr)
03016 Transfer RNA biogenesis [BR:
jae03016
]
OPV09_11230 (rnr)
Enzymes [BR:
jae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OPV09_11230 (rnr)
Messenger RNA biogenesis [BR:
jae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OPV09_11230 (rnr)
Transfer RNA biogenesis [BR:
jae03016
]
Prokaryotic type
tRNA degradation factors
OPV09_11230 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
CSD
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WWO48626
UniProt:
A0ABZ2GW57
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All DBs
Position
2477954..2480515
Genome browser
AA seq
853 aa
AA seq
DB search
MSQNTHTIPSREDILGIFRSVNAPLDPQSLGKTLQVHADSMDVLVRRLKAMERDGQLRSD
ASGVFSLADQSALVAGRVTSHRDGFGFVIPDDASADLFLPEKEMQKVLHGDKVMARIVGT
DRRGRPEGTIVEVTYRANTHVIGRLIQENGTWVVAPEDQRIGQDILVTGSVGKAKAGQIV
SVELTEQPMRFKQPVGKIVEVLGALDDPGMEIEIAVRKFNVPHIFSAAALKQAEKLPFEV
RAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRANCFRLIVAIADVSHYVKPN
DALDIDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPAVDRLTLVCDAVVSDKGELKAYQ
FYPAVIHSAARLTYDEVAAVLGNTKGPEAARRADILPHLQNLEAVYRALLKARTERGAID
FETTETYIVCNSAGKIEKIIPRTRNEAHKIIEECMLAANVCAADLLLRNKHPGTYRIHAS
PTKEKLTQVRTFLKQVGLNLTGGDTPSASDYQTLMQQIKERPDAALLQTMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIKAILQGKKYEPKLSEKTVLNTNVSNA
TRKQQAKDKADGKPKKTDLTIWDALGVHCSANERRADEASRDVEAWLKCYFMQDKLGEEF
TGTITGVTTFGVFVQLDTLFVEGLVHVTELGTDYFQYDDARHELRGERTGKRYQLTDRLT
VQVARVDLETRKIDLRLVTDAELAGEEAPAKQAGGKRKGEKKSMVKPGPATEQRHEIKTS
VNGGGNNGGKPGKGSGGRSNGAKAQAKPAAKEAPKAAAPKAAAPKRSKKPAAAPAAAAPR
AAKTVSKSSKNKR
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
ttgagccaaaatacccacaccatccccagccgggaggacattctcggcatattccgcagc
gtcaacgcgcctctcgacccgcagtctctcgggaaaacgctgcaagtgcatgccgattcc
atggatgtcctggtccgtcgcctgaaagcgatggagcgcgacggccagctcaggtctgac
gccagcggtgttttcagcctggccgaccagagcgcgcttgtcgccggtcgcgtcaccagc
caccgcgatggcttcggcttcgtcattcccgacgacgccagcgccgacctgttcctgcct
gagaaagaaatgcagaaagtactgcatggcgacaaggtcatggcccgcatcgtcggcacg
gaccgccgcggccgcccggaaggcacgattgtcgaagtcacctaccgcgccaatacccac
gtcatcggccgcctgatccaggaaaacggcacctgggtcgtggcgccggaagaccagcgc
atcggccaggacattctggtcaccggttcggtgggcaaggcaaaagccggccagatcgtc
agcgtcgagctgaccgagcaaccgatgcgcttcaagcagccggtcggcaagatcgtcgaa
gtgctgggcgctttggatgatcccggcatggaaattgaaattgccgtgcgcaaattcaac
gtgccgcacatcttttccgccgccgccctcaagcaagctgaaaagctgccgttcgaagtg
cgcgccgccgacctgaaagaccgtgtcgacctgcgcgacgtgcctttggtgaccatcgat
ggcgaggacgcgcgcgatttcgacgatgccgtatattgcgagcccgtcaagatcggccgc
gccaactgcttccgcctgatcgtggcgattgccgacgtcagccattacgtgaaaccgaac
gacgcgctcgatatcgacgcgctcgagcgcagcacgtccgtctacttcccgcgccgcgtg
atcccgatgctgccggagaaactgtcgaacggcctgtgctcgctgaacccggccgtcgac
cgcctgaccctcgtttgcgacgccgtcgtcagcgacaagggcgagctgaaggcttaccag
ttctatccggccgtcatccattcggccgcgcgcctcacgtatgacgaagtcgctgccgtg
ctgggcaacaccaagggtcccgaagcggcacgccgcgcggacatcctgccgcacctgcaa
aacctggaagccgtctaccgcgccttgctgaaagcacgcacggagcggggcgccatcgat
ttcgaaacgacggaaacgtatatcgtctgcaatagcgccggcaagatcgaaaagatcatt
ccccgcacgcgcaacgaagcgcacaagatcatcgaagagtgcatgctggcggccaacgtc
tgcgcggccgatctgttgctgcgtaacaagcacccaggcacctaccgcattcacgccagc
ccgaccaaggaaaagctcacgcaagtgcgcactttcctgaaacaggtcggcctgaacctg
acgggcggcgacacgccatcggcatccgattaccagaccctgatgcagcagatcaaggag
cgtcccgacgcggccctgctgcaaacgatgctgctgcgttcgatgcagcaagccgtctac
agcccggacaatatcggccacttcggcctggcgtacgaggcgtatgcccacttcaccagc
ccgatccgccgctatcccgacctgctgacgcaccgcgccatcaaggccatcttgcaaggc
aagaagtacgagccgaagctgtccgagaagaccgtgctgaacacgaacgtgtcgaacgcc
acgcgcaagcagcaggccaaggacaaggccgatggcaagccgaagaagacggatctgacg
atctgggacgcgctgggcgtgcattgctcggccaacgagcgccgcgccgacgaagcatcg
cgcgacgtggaagcctggctgaagtgctacttcatgcaggacaagctgggcgaagagttt
accggcacgatcaccggcgtgactacctttggcgtgttcgtgcagctggacaccctgttt
gtcgaaggcctggtgcacgtcaccgagctgggcaccgactacttccagtacgacgacgcg
cgccatgaattgcgcggcgaacgtacgggcaagcgctaccagctgaccgaccgtctgacg
gtgcaagtggcgcgtgtcgatctggaaacgcgcaagatcgacctgcgcctggtcaccgat
gcggaactggcgggcgaagaagcgccagccaagcaagctggcggcaagcgcaagggcgaa
aagaaatcgatggtcaagcccggtcccgcgaccgagcagcgtcacgagatcaaaaccagc
gtcaatggcggcggcaacaatggtggcaaacccggcaagggttccggcggccgttccaac
ggcgccaaggcgcaagccaagcctgcagccaaggaagcccccaaggcggcagcccccaag
gccgccgcgccgaagcgcagcaagaaaccagccgcggcacccgctgcggcggcaccacgt
gcagcaaaaactgtatcaaaatcaagcaagaacaagcgataa
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