Janthinobacterium aestuarii: OPV09_18445
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Entry
OPV09_18445 CDS
T11009
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jae Janthinobacterium aestuarii
Pathway
jae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OPV09_18445 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jae03400
]
OPV09_18445 (mfd)
Enzymes [BR:
jae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OPV09_18445 (mfd)
DNA repair and recombination proteins [BR:
jae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OPV09_18445 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
AAA_30
CTE_SPB4
ERCC3_RAD25_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WWO44698
LinkDB
All DBs
Position
4111207..4114650
Genome browser
AA seq
1147 aa
AA seq
DB search
MSLDLTKALPKPGNRYALPALYGSSDAYALALAASALKARGQMLAVVVAQASDGQRLLDE
IPWFGGKELRCHLLPDWETLPYDAFSPHQDLVSERLATLHEIQTRQCDVLIVPATTALVR
LAPPSFLAAYTFFFKKGEKLDEARLKSQLTLAGYSHVSQVMSPGEYSVRGGLLDLFPMGS
ALPYRLDLFGDTIETIRTFDADTQRSLYPVHEVRLLPGREFPMDEAARTTFRNRWREQFE
GDPSRSVVYKDISSGIASAGIEYYLPLFFEQTATLFDYLPPDASLALVGEIDAAIGRFWT
DTQSRYRFLKADRERPILPPESLFLSDEQFFGLAKPYARLAIAKSNDALASELSAPVPNI
AVNRRADDPLANLRSYLLQSGRRVMICAESNGRRETLQQYFSEYDLHLTPVEGSDGFLQS
DAKLMLGVAPLHAGFELFTPDGNLSFITETELYAGSGRRVGTKKQEGVTQVESMVRDLSE
LKIGDPVVHINHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGAS
PEDAPLHSLGSGQWEKAKKRAAEQVRDTAAELLNLYARRALRQGHSFEFSSHDYQRFADS
FGFDETPDQAEAIHNVIKDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILA
PTTLLAEQHAQTFADRFADWPVRIAELSRFRSGKEITQAFKGMADGTIDIVIGTHKLLSD
DVKFTRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSII
ATAPQKRLAIKTFVRSEGEAIIREACLRELKRGGQIYFLHNEVETIQNRLAMLTELLPEA
RIAVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDVQGLTKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAG
EVLGESQSGEMTEIGFQLYSDMLNEAVRSLKAGKEPDLAAPLASTTEINLHVPALLPADF
CGDVHERLSIYKRLANCATQEKIDDIQEELIDRFGKLPDAVKALVETHRLRIAAKTVGIV
KIDVHGEAATLQFMAKPPIDPMRIIDLIQKNRHIKLHGQDKLKITAAMPDLAARVTQIKT
TIKQLTV
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtccttagacttaacaaaagccctccccaagcccggcaaccgctatgcgctgcccgcc
ctgtatggttcatccgacgcctatgccctggcgctggccgcttcggccttgaaagcgcgg
ggccagatgctggccgtggtggtggcgcaggccagcgacggccagcgcctgcttgatgaa
atcccgtggtttggcggcaaggaactgcgctgccatctgctgccggactgggaaaccctg
ccctacgatgcgttctcgccgcaccaggacctggtctccgagcgcctggccaccttgcac
gaaatccagacgcgccagtgcgacgtgctgatcgtgccggccaccacggcgctcgtgcgc
ctggcgccgccatcgttcctggccgcctacaccttcttcttcaagaagggcgaaaagctc
gatgaagcgcgattgaagtcgcagctgaccctggccggctacagccatgtctcgcaagtg
atgtcgccgggcgaatactcggtacgcggcggcctgctcgacctgttccccatggggtcc
gccctgccctaccgcctggacctgttcggcgacaccatcgagaccatccgcacgttcgat
gccgacacccagcgctcgctgtatcccgtgcatgaagtacggctgctgccgggccgcgaa
ttccccatggacgaagcggcgcgcaccaccttccgcaaccgctggcgcgaacagttcgaa
ggcgatccatcgcgctcggtcgtctacaaggacatcagcagcggcatcgcctcggccggc
atcgaatactacctgcccttgttcttcgagcagacggccaccctgttcgactacctgccg
cccgacgcctcgctggccctggtgggagaaatcgacgctgccatcgggcgcttctggacc
gatacccagtcgcgctaccgcttcctgaaagcggaccgcgagcggcccatcctgccgccc
gaatcgctgttcctgtccgacgagcagttcttcggcctggccaagccgtatgcgcgcctg
gcgatcgccaagtcgaacgatgcgctggcgtccgaactgtcggcgcccgtgccaaacatc
gccgtcaaccgccgcgccgacgatccgctggccaacctgcgcagctatttgctgcaatcg
gggcgccgcgtgatgatctgcgccgaatcgaacggccgccgcgaaaccttgcagcagtac
ttcagcgaatacgatctgcacctgacgcccgtcgaaggcagcgatggctttttgcaatcc
gacgccaaactgatgttaggcgtggcgccgctgcatgcgggtttcgagctgtttacgccg
gatggaaatttatccttcatcaccgaaacggagttgtacgccggttccggccgccgggtc
ggcaccaagaagcaggaaggcgtgacgcaggtcgaatcgatggtgcgcgacctgtcggag
ctgaaaatcggcgaccccgtcgtgcacatcaaccacggcatcgggcgctacatgggcctg
accagcatggacctgggcgaaggcgaaacggagttcctgcacctggaatacgcgaaggac
accaaactgtacgtgcccgtgtcgcagctgcatgtgatctcgcgctattcgggcgcgtcg
ccggaagacgcgccgctgcactcgctcggctcgggccagtgggaaaaggcgaagaagcgc
gcggccgaacaggtgcgcgacacggccgccgagctgctcaacctgtatgcgcgccgcgcg
ctgcgccagggccactcgttcgaattctcgtcgcacgactaccagcgcttcgccgacagc
ttcggcttcgatgaaacgccggaccaggccgaggccatccacaacgtcatcaaggacatg
acttccggtaaaccgatggaccgcctcgtctgtggcgacgtcggcttcggcaagacggaa
gtggcgctgcgcgccgcgttcatcgccgtcatgggtggcaagcaggtggccatcctggcg
cccaccaccctgctggccgagcagcatgcgcaaacctttgccgaccgtttcgccgactgg
cccgtgcgcatcgcggaattgtcgcgcttccgtagcggcaaggaaatcacacaggcgttc
aagggcatggccgacggcaccatcgacatcgtcatcggcacccataaactgctgtccgac
gacgtgaaattcacgcgcctgggtctcgtcatcatcgacgaggaacacaggttcggcgtg
cgccagaaggaagcgctgaaagccttgcgtgcggaagtggacgtgctgaccctgacggcc
acgccgatcccgcgcacactgggcatggcactggaaggcttgcgcgacttttccatcatc
gccacggcgccgcaaaagcgcctggccatcaagacgttcgtgcgcagcgagggcgaagcc
atcatccgcgaagcgtgcctgcgcgaactcaaacgcggtggccagatctacttcctgcac
aacgaagtggaaaccatccagaaccgtctggccatgctgacggaactgctgcccgaggcg
cgcatcgccgtggcgcatggccagatgcacgagcgcgacctggaaaaagtcatgcgcgac
ttcgtcgcccagcgtttcaatatcctgctgtgcacgacgatcatcgagaccggcatcgac
gtgccgacggcgaacaccatcatcatgcaccgcgccgacaagttcggcctggcgcagctg
caccagctgcgcggccgtgtgggacgctcgcatcaccaggcctacgcctacctgctggtg
cacgacgtgcaaggcctcacgaaactggcgcagcgccgcctggacgccatccagcagatg
gaagaactgggcagcggcttttacctggccatgcacgacctggaaatccgcggcgccggc
gaggtgctgggcgagagccagtcgggcgagatgacggaaatcggcttccagctgtattca
gacatgctcaacgaagccgtgcgctcgctgaaagcgggcaaggagccggacctggccgcg
ccgctggcgtcgaccaccgagatcaacctgcacgtgccggccctgctgccggccgacttc
tgcggcgacgtgcacgagcgcctgtcgatctacaagcgcctggccaactgcgccacgcag
gagaagatcgacgatatccaggaggagctgatcgaccgcttcggcaagctgcccgacgcc
gtcaaggccctggtcgagacgcaccgcttgcgcatcgctgcgaaaaccgtgggcatcgtc
aagatcgacgtgcatggcgaggcggccactctgcaattcatggccaagccaccgatcgac
ccgatgcgcatcatcgacctgatccagaaaaaccgccatatcaagctgcatggccaggac
aagctgaaaatcacggccgccatgccggacctggccgcgcgcgtgacgcagatcaagacc
accatcaagcaattgacggtgtag
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