Janthinobacterium aestuarii: OPV09_23685
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Entry
OPV09_23685 CDS
T11009
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
jae Janthinobacterium aestuarii
Pathway
jae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OPV09_23685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jae03019
]
OPV09_23685
03009 Ribosome biogenesis [BR:
jae03009
]
OPV09_23685
Enzymes [BR:
jae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OPV09_23685
Messenger RNA biogenesis [BR:
jae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OPV09_23685
Ribosome biogenesis [BR:
jae03009
]
Prokaryotic type
rRNA processing factors
OPV09_23685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WWO45670
UniProt:
A0ABZ2GKP6
LinkDB
All DBs
Position
5259078..5262218
Genome browser
AA seq
1046 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARTYFREGVDVRNASVKEALREGQEIMVQVEKEERGNKGAALTSFVS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPAGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGAGKSANGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYDQAH
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFNTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSATIHVQVPVDVGAFLLNEKRGEVLKIENRHRIAVILIPNKHLETPH
YKLERIKHDDPRLEDSQASYNLAESAETDMAYSKRQKEEAKPRQEAVVKTITPDQPAPLV
ERKPVEVKAAPAPAPAAPQGLIAKIISFFTGAPAPVAPAPAPVVPAKPAGADRGDRNSRG
PRGRGRNGKPGREEREPGQGRPAQDDAAKEAEALEKAARPPRPPRPPREPREARENGDTA
AAPRERGERPERAERPERAERPERAERPPRQPREAREPRADKAVVAEVKAEELALVGATA
SAVSVVVPSNGPESDAAPANLLKAPANAGPEGEETETDVEGEEPRRRRRRGGRNRNRRDR
ETGELIESANGDNEGQDAPVISFTVAPAPEAATDAAPVAVVAAAAVVAVAAPVEAALDAA
PAVVAEVVEVVEVVEVVKVEEAAPAAEVIVPPAPVEAAVAAAQAEPAAAEPAPAAEYSFA
EKAEVAPAPAPAPAEVIVEAAPVVETAAAVETVAVAEEVPAAAPVAEAAPAVVEAAPVVA
EAAPAPAPAPAPAPVVAPAPAPAAPLDLSAVLGSAGLTLAATDPEKLRLAQEAAAKAVAP
VRKPRERKPLPPQSDEPLIQVNTQRP
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgccacgcagcaagaagaactgcgcgtagcgattgtcgac
ggacaaaaactgatcgacatcgatatcgagacagccgggcgcgaacagcgcaaatccaac
atctacaagggcgtgatcacgcgcatcgagccatcgctcgaagcgtgcttcgtcagctat
ggcgaagaccgccacggcttcctgcctttcaaggaagttgcccgcacgtatttccgtgaa
ggcgtcgacgtgcgtaacgcttccgtcaaggaagcgctgcgcgaaggccaggaaatcatg
gtccaggtggagaaggaagagcgcggcaacaagggcgccgccctgacctcgttcgtctcg
ctggccggccgttacctggtcctgatgccgaacaacccgcgtggcggtggcgtatcgcgc
cgcgtggaaggtgaagagcgccaggaattgcgcgaaaccatggataaactggacttgcct
gctggcatgtccgtgattgcccgcacggcaggcatcggccgcaacgtcgatgaactgcag
tgggacttgaattacctgatgcaactgtggcgcgccatcgaaggcgccggcaagtcggcc
aacggcgctttcctgatctaccaggaatcgtccctggttatccgcgccatccgcgactac
ttccagcccgacatcggcgagatcctgatcgataccgacgagatctacgaccaggcgcac
cagttcatgagccacgtgatgcccgacatggtgcaccgcgtaaaacgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgaacaccagatcgaaacggcgtacagccgcacc
gtgccgctgccatcgggtggcgccatcgttatcgaccataccgaagcgctggtctccgtc
gacgtcaactcggcccgcgccacgcgcggctcggacatcgagacgaccgccttcaacacc
aactgcgaagcggccgaagaagtggcccgccagctgcgtctgcgcgacttgggcggcttg
atcgtcatcgacttcatcgacatggaagtggcgaaaaaccagcgcgaagtggaacagcgt
ctgaaagatgcgctgcaccatgaccgggcccgcgtacaaatgggcaagatctcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgcccttcgctgtccgaaggttcgcacgtg
acgtgcccgcgctgctccggcaccggccacatccgcgatacggaatcgtctgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaactcggccaccatccacgtgcaa
gtgcccgtggacgtgggcgccttcctgctcaacgaaaagcgcggcgaagtactgaagatc
gagaaccgccaccgcatcgccgtgatcctgatcccgaacaagcatctggaaacgccacac
tacaaactggaacgcatcaagcacgacgacccgcgtctggaagacagccaggccagctac
aacctggctgaaagcgctgaaaccgacatggcgtacagcaagcgccagaaggaagaagcc
aagccgcgccaggaagccgtcgtcaagacgatcacccctgaccagccggcaccgctggtc
gagcgcaagccggtggaagtgaaggccgccccggcgcctgcacccgccgcgccgcaaggc
ctgatcgccaagatcatcagcttcttcaccggcgctccggcaccggtggcgcccgcacct
gctcctgtcgtaccagccaagccggccggcgccgaccgtggcgaccgcaacagccgtggc
ccgcgtggccgtggccgcaatggcaagcctggccgcgaagaacgcgaaccaggccagggc
cgtccagcccaggacgatgcagcgaaagaagcggaagcactggaaaaagcggcccgtccg
ccacgtccaccgcgtccgccacgcgaaccgcgtgaagcgcgcgagaacggcgatacggcg
gcagcaccgcgcgaacgcggtgaacgccctgaacgcgccgagcgtccggaacgcgcggaa
cgtccagagcgcgccgagcgtccgccacgccagccacgcgaagcgcgcgaaccacgcgcc
gacaaggctgttgttgctgaagtgaaagctgaagagctggcactggttggcgccaccgcc
agcgcagtcagcgtcgtcgtgccgtcaaacggtcctgaatccgacgccgcaccggcgaac
ctgctgaaggcgccggcaaatgccggtcctgaaggcgaagagacggaaaccgacgtggaa
ggcgaagaaccgcgccgccgtcgtcgtcgtggtggccgtaatcgcaaccgccgtgaccgc
gaaacgggcgagctgatcgaatcggcaaacggtgacaacgaaggccaggacgcaccagtg
atcagctttacggtcgctccggcgccggaagctgcaacggatgccgctccagtcgccgtc
gtggctgccgccgctgtcgtcgccgtcgccgcaccagtggaagctgcattggatgccgct
cctgccgtcgtggctgaagtcgtggaagtggtcgaagtggtggaagtggtcaaggttgaa
gaagccgcaccagcggctgaagtgatcgtgccgccggcccctgtcgaagccgccgttgct
gcagcgcaagctgaaccagccgctgccgaaccagcaccagctgccgagtacagctttgcc
gagaaagcggaagtcgcaccggcgcctgcgcctgctccagcggaagtcatcgtcgaagcg
gcgccagtcgtggaaacggcagctgccgtggaaaccgtcgccgtggctgaagaagttcca
gcagcagcgccagttgccgaagcggcaccagccgtggtggaagctgccccggtggttgcc
gaagcggctcccgcccctgctccggcaccagcaccagcgcctgtcgttgctcctgctcct
gctcctgccgcgccgctggacttgagcgcggtgctcggttcggccggcctgaccctggct
gccaccgatccggaaaaactgcgcctggcgcaggaagcggccgcgaaggcagtcgctccg
gtccgcaagccgcgcgaacgcaagccattgccgccgcaatcggatgagccgttgatccag
gtcaacacgcaacgtccataa
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