Janthinobacterium aestuarii: OPV09_24995
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Entry
OPV09_24995 CDS
T11009
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jae Janthinobacterium aestuarii
Pathway
jae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OPV09_24995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jae03019
]
OPV09_24995
Enzymes [BR:
jae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OPV09_24995
Messenger RNA biogenesis [BR:
jae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OPV09_24995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
P-loop_SecA
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WWO45921
UniProt:
A0ABZ2GJD9
LinkDB
All DBs
Position
complement(5557482..5559032)
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AA seq
516 aa
AA seq
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MSETESTPTPSPAIAPEAAPAAAAPAPAPAASAAPSLTFADFGLAPEIQRALTDQGYTHP
TPIQEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQLLMAHASSSMSPARHPVRALILT
PTRELAVQVAENVKAYAKHTPLRSTVVFGGMDMKPQTVILRGGVEIVIATPGRLLDHIEQ
KNISLSQVQMLVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATFL
NDPLTIEVARSNQTADKVTQVVYKVTEDQKHALVAHLLRQRDLKQVIVFSNTKIGASRLA
RVLEQEGMSATAIHGDKSQQERMAALESFKKGEIDVLVATDVAARGLDISDLPCVINFDL
PYNAEDYVHRIGRTGRAGASGDAISIYSDKDERLLADIEKLIKQSIKRGELTGFNPAPAR
SSDSERRPPRRTEGGEARPARAPESRHAGESRDSRSAERGARPAFGPGARREKADPWFLK
PYEPAKAAAPAAASMAPAAAKPKQKVAALLGGLLKS
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaccgaatcgactcctacgccaagcccggcgattgcccctgaagcggcgccc
gccgccgctgcgcctgcaccagcacctgccgcatccgctgctcccagcctgacttttgcc
gacttcggcctcgcgcctgaaatccagcgcgcactgaccgaccagggctacacccatccg
acaccgatccaggaacaagcgattcccgtcgtgctgcaaggccgcgatgtgatgggtgcc
gcgcaaacgggcaccggcaagacggccggtttttccttgccgatcattcagttgctgatg
gcgcatgccagcagcagcatgtcgccggcacgccacccggtgcgtgcgctgatcctcacg
ccgacgcgtgaactggcggtgcaggtggccgaaaacgtcaaggcttacgccaagcacacg
ccgctgcgctcgaccgtcgtcttcggcggcatggacatgaagccgcaaaccgtcatcctg
cgcggcggcgtggaaatcgtcatcgccacgccgggccgcttgctcgaccatatcgagcaa
aagaacatcagcctgagccaggtgcagatgctggtcatggatgaggcggaccgcatgctg
gacatgggctttttgccggacttgcaacgcatcatcaacttgcttccgaaacaacgccag
aacctgatgttctcggccacgttctcgccagagatcaagaagctggcggccaccttcctc
aacgatccgctgacgatcgaagtggcgcgcagcaaccagacggccgacaaggtcacgcaa
gtggtctacaaggtcacggaagaccagaagcatgccctggtagcccatctgctacgccag
cgcgacctgaagcaggttatcgtcttctcgaacaccaagatcggcgcctcgcgcctggcc
cgcgtgctggaacaggaaggcatgagcgccacggcgattcacggcgacaagagccagcag
gaacgcatggcggcgctggaatcgttcaagaagggcgagatcgacgtgctggtagccacc
gacgtggcggcacgcggcctggatatttcggacttgccttgcgtcatcaacttcgacttg
ccgtacaacgcggaagactatgtgcaccgtatcggccgcacgggccgtgccggcgcctcg
ggcgacgccatctcgatctactcagataaagacgagcgcttgctggccgatatcgagaaa
ctcatcaagcaaagcatcaagcgcggcgaattgacgggcttcaatcccgctcctgcccgc
agcagcgacagcgagcgccgcccaccgcgccgcaccgaaggtggcgaggcgcgtcccgca
cgcgccccggagagccgccatgccggcgagagccgcgacagccgctccgccgagcgcggt
gcgcgtcccgcctttggtcccggcgcccgccgcgaaaaggccgatccctggttcttgaag
ccatatgagcccgccaaagcagccgctcccgctgccgccagcatggcgcctgccgcggcc
aagccgaagcagaaggtggcggcgttgttgggtgggttgctgaagagttga
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