Janthinobacterium aestuarii: OPV09_26595
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Entry
OPV09_26595 CDS
T11009
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
jae Janthinobacterium aestuarii
Pathway
jae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OPV09_26595 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jae03021
]
OPV09_26595 (rho)
03019 Messenger RNA biogenesis [BR:
jae03019
]
OPV09_26595 (rho)
Transcription machinery [BR:
jae03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OPV09_26595 (rho)
Messenger RNA biogenesis [BR:
jae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OPV09_26595 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
WWO46218
UniProt:
A0ABZ2GNQ5
LinkDB
All DBs
Position
5903882..5905144
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AA seq
420 aa
AA seq
DB search
MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD
GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GESPEMSKHRILFENLTPLHPNEPLRLEREMNGQENITGRIIDLIAPIGKGQRGLLVASP
KSGKSVILQHIAHAITANHPDITLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV
QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIETGSRMDDVIFEEFKGTGNMEVHLERRLAEKRVYPAINL
NKSGTRREELLIKPNELQKIWILRKLLYSMDEIEAMEFILDKMKATKNNAEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgaactaaaggccctacacgtatccgccctgcttgagatggcgatcggt
cttgacattgacaacgcagcccgcttgcgcaaacaggagctgatgttcgctatcctgaaa
aaacgcgccaagtccggcgaacagatttttggcgatggcgccctggaagtgctgcctgac
ggcttcggcttcctgcgctcgcccgacgccagctacatggcgtccaccgacgacatttac
atctccccttcgcaaatccgccgcttcaatctgcacaccggcgattcgatcgaaggcgag
gtacggaccccgaaagatggcgaacgctatttcgcattggtcaaagtcgacaaggtcaac
ggcgaatcgccggagatgtcgaaacaccgcatcctgtttgaaaacctgacaccgctgcac
ccgaacgagccgctgcgcctggaacgtgaaatgaatggccaggaaaacatcaccggccgc
atcatcgacctgatcgccccgatcggcaaaggccagcgcggcttgctggtggcgtcgccg
aaatccggtaaatccgtgatcctgcagcacatcgcgcatgcgattacggcaaatcacccg
gatatcaccctgatcgtgctgctgatcgacgaacgtccggaagaagtgaccgagatgcaa
cgctccgtgcgcggcgaagtcgtcgcctcgaccttcgacgagccggccacgcgccacgtg
caagtggccgagatggtgctggaaaaagccaagcgcctggtcgaaatgaaaaaagacgtg
gtcatcctgctcgactcgatcacccgtctggcccgcgcctacaacaccgttatccctgcc
tcgggcaaggtcctgaccggcggtgtcgacgcgaacgcgctgcaacgtccaaaacgcttc
ttcggcgccgcgcgcaatatcgaagaaggcggctcgctgaccatcatcgccacggcgctg
atcgaaacgggttcgcgcatggatgacgtgatctttgaagaattcaagggtaccggcaac
atggaagtgcatctggaacgccgtctggccgaaaaacgcgtctatccggcaatcaacctg
aacaaatcgggtacccgccgcgaagaactgctgatcaagccgaacgaactgcaaaaaatc
tggatcctgcgcaagttgctgtactcgatggacgagatcgaggcgatggagttcattctc
gacaagatgaaagccacgaagaataacgccgagttcttcgacatgatgcgccggggggga
taa
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