Janthinobacterium agaricidamnosum: GJA_1202
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Entry
GJA_1202 CDS
T03157
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
jag
Janthinobacterium agaricidamnosum
Pathway
jag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJA_1202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jag03019
]
GJA_1202
03009 Ribosome biogenesis [BR:
jag03009
]
GJA_1202
Enzymes [BR:
jag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GJA_1202
Messenger RNA biogenesis [BR:
jag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GJA_1202
Ribosome biogenesis [BR:
jag03009
]
Prokaryotic type
rRNA processing factors
GJA_1202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CDG81855
UniProt:
W0V2L7
LinkDB
All DBs
Position
complement(1328813..1332022)
Genome browser
AA seq
1069 aa
AA seq
DB search
MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSYGED
RHGFLPFKEVARTYFREGVDVRNASVKEALREGQEIMVQVEKEERGNKGAALTSFVSLAG
RYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPAGMSVIARTAGIGRNVDELQWDL
NYLMQLWRAIEGAGKSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIYEQAHQFM
SHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVN
SARATRGSDIETTAFNTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQRLKD
ALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQVLR
IIQEEAMKENSATIHVQVPVDVGAFLLNEKRGEVLKIENRHRIAVILIPNKHLETPHYKL
ERIKHDDPRLEESQASYNLAEHAETDMAYSKRQKEETKPRQEAMVKTITPDQPAPLVERK
PAEAAKPAPAAAPAPQGLLAKIISFFTGKPEPVAAPVVPAAPVKPAGNDRGGDRNSRGPR
GRNNRNGKPGREEREPGQGRPAAAEEAGKENETSDKAARPPRPPRPPREAREVREPVEGQ
APRERGERPERAERGERPPRPPREPRADKAPALESKVEELAVASLVTAAVAAPVSHPAAD
AEAPATSLLKAAPNAGPEGEEAEVEGEEPRRRRRRGGRNRNRRDRETGELIEGSAAEGEG
QEHAPAISFTVAPASEAAAVVAAEASAVAVAEVAAAPVAQVAAAVVVDAVISAAIAEVAA
PAAAAVTEVSPAVAEVAAPVLAEVAPLAETVAAVVAEPVVAVPATPESAPVAEYSFAAKE
EQPAAVAPVEPAALEVAPATPVEAAADVVTAPLAAPAPASAPVVAEAAPVTLEVAPAPVV
AAAPIVAPAAVAEPVVEAAVAAAPAAAPIAAAVPEVIPAPAAAAPALPVDLNAVLGSAGL
TLAATDPEKLRAAREAAAKSVAPVRKPRERKPLPPQNDEPLIQVNTQRQ
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttaatgctacacagcaagaagagctgcgcgtagccattgtcgacggtcagaaa
ctgatcgacatcgatatcgagaccgccgggcgcgaacagcgcaagtccaacatctacaaa
ggcgtgatcacccgcatcgaaccgtcgctggaagcctgcttcgtcagctacggcgaagac
cgccacggtttcctgccgttcaaggaagtcgcccgtacttacttccgcgaaggcgtcgat
gtgcgcaatgcgtccgtcaaggaagcgctgcgcgaaggccaggaaatcatggtccaggtc
gagaaggaagaacgcggcaacaagggtgcggcgctgacctcgtttgtttcgctggccggc
cgctacctggtcctgatgccgaacaatccgcgcggcggcggcgtatcgcgccgcgtcgaa
ggcgaagaacgccaggaattgcgcgaaaccatggataaactggacttgcctgctggcatg
tccgtgattgcccgcaccgccggcatcggccgcaacgtcgatgaattgcagtgggacttg
aattacctgatgcaactgtggcgcgccatcgaaggcgccggcaaatcggcatcgggcgcc
ttcctgatctatcaggaatcgtcgctggtgatacgcgcgatccgcgattacttccagcct
gacatcggcgaaatcctgatcgataccgacgatatctacgaacaggcgcaccagttcatg
agccacgtgatgcccgacatggtgcaccgcgtaaaacgctacagcgacgacgtgccgctg
ttttcgcgcttccagatcgaacaccagatcgaaaccgcgtattcgcgcaccgtgccattg
ccttccggcggcgcgatcgtcatcgaccacaccgaagcgctggtgtcggtcgacgtcaac
tcggcccgcgccacccgcggttcggacatcgaaaccaccgccttcaacaccaactgcgaa
gccgccgaagaagttgcccgccaattgcgcttgcgcgacctgggcggcttgatcgtgatc
gacttcatcgacatggaagtggcgaagaaccagcgcgaagtcgaacagcgcctgaaagac
gcgctgcaccatgaccgcgcccgcgtccagatgggcaagatttcgcgcttcggcctgatg
gaattgtcgcgccagcgcctgcgtccgtcgctgtccgaaggcagccacgtgacgtgcccg
cgctgctccggcaccggccatatccgcgataccgaatcgtccgccctgcaagtgctgcgc
atcatccaggaagaggcgatgaaggaaaattcggccaccatccatgtgcaggtgccggtc
gatgtcggcgccttcctgctcaacgaaaagcgcggcgaagtgctgaagatcgagaaccgc
caccgcatcgccgtgatcctgatcccgaacaagcatctggaaaccccgcattacaagctg
gaacgcatcaagcacgacgatccgcgcctcgaagaaagccaggccagctacaacctggcc
gagcacgccgaaaccgacatggcgtacagcaagcgtcaaaaagaagaaaccaagccgcgc
caggaagccatggtcaagaccatcacccctgaccagcctgcgcctctggtggaacgcaaa
ccggctgaagcggccaagccggcgccagccgccgcgccagcaccgcaaggcttgctcgcc
aaaatcatcagcttcttcaccggcaaacctgaaccggtggcagcgcctgtcgtgccggcg
gcgccagtcaaaccggccggcaacgaccgtggcggcgaccgcaacagccgtggcccacgc
ggccgcaacaaccgcaacggcaaaccgggccgcgaagaacgcgaacctggccagggccgg
ccggccgcggctgaagaagcaggcaaggaaaacgagaccagcgacaaggcagcccgtccg
ccacgtccgccgcgtccgccacgcgaagcgcgtgaagtgcgcgagccggtcgaaggccag
gcgccacgcgagcgtggtgaacgtccagaacgcgcggaacgcggcgagcgtccgccacgt
ccgccacgcgaaccgcgtgccgacaaagcccctgcgctggaaagcaaagtggaagaattg
gcagtggccagcctggtaacggcagctgttgccgcaccagtcagccacccagccgccgat
gctgaagcgccggccaccagcttgctgaaagccgcgccgaatgccggccctgaaggtgaa
gaagcggaagtggaaggcgaagaaccgcgccgccgccgccgccgtggcggccgcaaccgc
aatcgccgcgaccgtgaaaccggcgagttgatcgaaggttccgcagcagaaggcgaaggc
caggaacatgcaccggcaatcagcttcacggtggccccggctagcgaagcggcagcggtt
gtggcggcggaagccagcgccgttgccgtcgctgaagttgctgctgcgccagtggcgcaa
gtcgccgctgcggtagttgttgacgctgttattagcgccgcaatcgccgaagttgccgcg
cctgccgccgctgccgtgactgaagtcagtcctgcggtggccgaagtggccgcgccagtg
ttggccgaagtcgcgccgcttgctgaaaccgttgctgctgtcgttgcagagcctgttgtt
gccgtgccagccacgccggaatcggcgcctgtcgcggaatacagctttgccgcgaaagaa
gaacagccggccgcagttgctccggttgagccagccgcgcttgaagttgccccggcaacg
ccagttgaagcggcagccgacgtcgtgacggctccgctcgcggcgccagctccagcctcg
gcgccagtggttgccgaagcagcgccagtcacgcttgaagtcgctcctgctccagtagtc
gccgcggcgccaatcgttgctcctgctgccgtagccgagccggtggttgaagctgctgtg
gcggcggcgccggccgcggccccgatagcggctgcagtgcccgaagttatccctgcgcca
gccgctgcagcgccagcgctgccggtcgacttgaacgcggtactgggttcggccggcctg
acgctggcggcaaccgatccggaaaaactgcgcgcggcacgcgaagcggcagcgaaatcg
gtggcgccagtgcgcaaaccgcgcgaacgcaagcctttgccgccgcaaaacgatgagccg
ttaatccaggttaacactcaacgccagtaa
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