Janthinobacterium agaricidamnosum: GJA_1302
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Entry
GJA_1302 CDS
T03157
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
jag
Janthinobacterium agaricidamnosum
Brite
KEGG Orthology (KO) [BR:
jag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jag03019
]
GJA_1302 (hrpA)
Enzymes [BR:
jag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GJA_1302 (hrpA)
Messenger RNA biogenesis [BR:
jag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GJA_1302 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
T2SSE
nSTAND3
SRP54
NACHT
AAA_30
TsaE
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
CDG81955
UniProt:
W0V309
LinkDB
All DBs
Position
1427779..1431816
Genome browser
AA seq
1345 aa
AA seq
DB search
MQPRQQPRQQPRQQQGQRPGSVQGPAQGQPPRRPGQRAPREPKVAREADAPFRNPLPPIT
YPEDLPVSGRRAEIAEALQANQVIIVCGETGSGKTTQLPKICLELGRGQKGLIGHTQPRR
IAASSTAKRIAQEMGTPLGETVGFKVRFADTLNRGAAVKLMTDGILLAETQTDPLLKNYD
TIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDADRFARHFGTPEKPAPVIE
VSGRLYQVEVRYRPVEREAVAMPGADTAKAPQKAPNARDAAREKRDLMDAVVDGVEELCR
IGSGDVLVFLPGEREIRDCAEALRKHHPPHVEILPLFARLSAEEQERVFKVSNARRIVLA
TNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPIAQSAANQRAGRCGRVADGV
CIRLYEEQDYLLRPKFTEPEILRSSLASVILRMKSLHLTDVETFPFIEPPLARAIADGYQ
LLHELGAVDDVNRLTPLGNKLAKLPLDPRVGRMILAALDNVCLTEVLIVAAALSVQDPRD
RPLEHQQAADEAHKKFADEKSEFLSYIKIWTWFESAIEHKKTNRQLQDNCRSNFLSQLRL
REWRDVHSQLLTIVKEQGWRLNDAPATYENLHMALLTGLLGNIGFKGEDEPGAGFLGARG
IKFNVWPGSSLLKKPGKWIMAAELVDTTRLYARCVAQIQPEWLEKVGGHLLKKSWGEPRW
EKRSAQVSASERATLYGLVVYSQRRINYGNFNPSEARDIFIRDALVGGDFDTRAPFFAHN
HKLIKEIENLEHKSRRLDVLVDDELIAAFYDKLLPATVCNGAGFEKWHKDATAAQAKLLF
LNRDELMRHEAAGVTTDLFPKIMAVTGLEMQLTYHFEPGSLRDGVTLAVPLYALNQLPRE
RCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAAKFCERVHAAGVFGRGDLIDAVIA
DIRAQITISVLTTDFKPETLPAHHFMNFKVIDEHGRQLEMGRNLATLQAEFGGQARQSFQ
KLAEVSKPQAGTPLKADVVLAAKVASGNAPKAGNTVPANSVAQHMGLTGWTFGELPELLE
IVQGKLTLIGFPALVDKGSHCDLEVFDDPTVAARTHRVGLRRLFALQLKEQIKYIEKSIP
GLQQMGMQFMALGSQEELREQIINKALDIACLQDPLPIDAASFTKRKDEGKSRLVLLVNE
IARLLSQVLTEFHGLPKRLQNVQPQAAADMQSQLQGLVNKRFLSDNDYTQLSHFPRYLKA
INVRLEKLRADPARDAKLMAEWQQAAAPYLRFAKDRQAGKNTDPKLVEFRWMLEELRVSL
YAQELRTPMPVSAKRLQKVWESMQR
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
gtgcagccacgccagcagccacgccagcagccgcgtcaacagcaggggcaaaggccgggc
tcagttcagggaccagcgcaagggcagccgccgcgccggcccggacagcgtgcgccgcgc
gagccgaaggttgccagggaagccgacgcgccgttccgcaatccgctgccgccgattact
tatccggaagatttgccggtctcgggccggcgcgccgaaatcgccgaggccttgcaagcg
aaccaggtcatcatcgtttgcggcgagaccggttccggcaagaccacccagttgccgaaa
atttgcctggagctgggccgtggccagaaaggcttgatcggccatacccagccgcgccgg
atcgccgcgtcgtcgaccgccaagcgcatcgcgcaggaaatgggcacgccgctgggcgaa
accgtcggcttcaaggtgcgcttcgccgatacgctgaaccgtggcgcggcggtcaagctg
atgacggacggtatcttgctggcggaaacgcaaaccgatccgctgttgaaaaattacgac
accatcatcatcgatgaggcccacgaacgcagtctgaacatcgatttcctgctcggttac
ctgaaacagctgttgccgcgccggccggacttgaaaatcatcatcacctcggccaccatc
gacgccgaccgttttgcgcgccatttcggcacgccggaaaagccggcgccggtgatcgaa
gtgtcgggccgtttgtaccaggtggaagtgcgctaccgtccggtcgagcgcgaagccgtg
gccatgccgggcgccgacactgccaaggcgccgcagaaagcgccgaatgcgcgcgacgcc
gcgcgcgaaaaacgcgacttgatggatgcggtggtcgatggcgtcgaggaattgtgccgc
atcggttccggcgatgtactggtgttcttgccgggcgaacgcgaaatccgcgattgcgcc
gaagcgttgcgcaaacatcatccgccgcatgtcgagatcttgccgctgttcgcccgcctg
tcggccgaagagcaggaacgggtattcaaggtcagcaatgcgcgccgcatcgtgctggcc
accaacgtggcggaaacctcgctgacggtgccgggcatccgttatgtcgtcgatgccggc
ctggcgcgcgtcaaacggtatagctaccgcaacaaggtcgagcaattgcagatcgagccg
atcgcgcaatcggcggccaaccagcgcgccgggcgttgcggccgggttgccgacggtgtc
tgtatccgcctgtacgaagagcaggattacctgctgcggccgaaattcaccgagccggaa
atcttgcgttcgtcgctggcgtcggtcatcttgcgcatgaagtcgctgcacttgaccgat
gttgaaaccttcccgttcatcgaaccgccgctggcgcgcgcgattgctgacggttaccag
ttgttgcacgaattgggcgcggtcgacgatgtcaaccgcctgacgccgctgggtaacaag
ctggccaaattgccgctcgacccgcgcgtcgggcgcatgattttggccgcgctggacaat
gtctgcctgaccgaagtgttgatcgtcgcggcggcgctgtcggtgcaggatccgcgcgac
cggccgctggaacaccagcaagccgccgatgaagcgcacaagaaatttgccgatgaaaaa
tcggaattcctcagctacatcaagatctggacatggttcgaatcggcgatcgaacacaag
aaaaccaatcgccagttgcaagacaattgccggagcaatttcctgtcgcaattgcgcctg
cgcgagtggcgcgatgtgcattcgcaattgctgaccatcgtcaaggaacagggctggcgc
ttgaacgacgcgccggcgacctatgaaaacttgcacatggcgttgttgaccggtttgctg
ggcaatatcggcttcaagggcgaagatgagccgggcgccggtttcctcggtgcgcgcggc
atcaagttcaatgtctggcccggttcttcgctgttgaagaagcccggcaagtggatcatg
gcggccgaactggtcgatacgacgcggctgtatgcgcgctgcgtggcgcaaatccagccc
gagtggctggaaaaagtgggcggtcacttgctcaagaaatcctggggcgagccgcgctgg
gaaaaacgtagcgcgcaagtgagcgcttccgaacgcgccacgctgtacgggctggtggtg
tacagccagcgccgcatcaactatggcaatttcaatccctccgaagcgcgcgacatcttt
atccgcgatgcgctggtcggcggcgacttcgatacgcgggcgccattctttgcccataat
cacaagctgatcaaggaaatcgaaaacctggagcacaagtcgcgccgcctggacgtgctg
gtcgacgacgaattgatcgccgcgttttacgataaattgctgccggcgaccgtctgcaat
ggcgccggttttgaaaagtggcacaaggatgcgactgctgcgcaagcgaagctgctgttc
ctgaaccgcgatgaattgatgcgccatgaagcggccggcgtgaccaccgacctgttcccg
aaaataatggcggtgaccgggctcgaaatgcaactgacctatcatttcgagccgggcagc
ctgcgcgacggcgtgacgctggcggtgccgctgtatgcgctgaaccagttgccgcgcgaa
cgctgcgaatggctggtgccgggcatgctgaaggaaaaagtccatttgctgctgaaatcg
ctgccgcaaaagctgcgccgccattgcgtgccgctgcccgattacgcggccaagttttgc
gagcgggtgcatgcggcgggcgtgtttggccgcggcgacttgatcgacgctgtcattgcc
gatatccgcgcccaaatcacgatcagcgtgctgaccaccgatttcaagccggaaaccttg
ccggcgcatcacttcatgaatttcaaagtgatcgacgaacatggccgccagttggaaatg
ggccgcaacctggccacgctgcaagccgaattcggcggccaggcgcgccagagtttccag
aagctggccgaagtgtcgaaaccgcaagcgggcacgcccttgaaggccgatgtcgtcctg
gcggccaaggtcgccagcggcaatgcgccgaaagccggcaatacggtgccggccaacagc
gtggcgcagcacatgggcttgaccggctggacctttggcgaattgccggaattgctggaa
atcgtgcaaggcaagttgaccttgatcggtttcccggcgctggtcgacaagggcagccat
tgcgacctggaagtattcgacgatccgaccgtggcggcgcgcacgcaccgggtcggcttg
cggcgtttgttcgcgctgcaattgaaagagcaaatcaagtacatcgaaaaaagcatcccc
ggcttgcagcagatgggcatgcaattcatggcgctgggttcgcaggaggagttgcgcgag
caaatcatcaacaaggcgctcgatatcgcctgtctgcaagatccattgccgatcgatgcc
gcgtcgttcaccaagcgcaaggatgaaggcaagtcgcggctggtgctgctggtcaatgag
atcgcccgtttgctgtcgcaagtgctgaccgaattccacggactgccgaaacgtttgcaa
aacgtgcagccgcaagcggcggcggacatgcaaagccagttgcaaggcttggtcaataaa
cgctttttatcggacaacgattacacgcagttgtcgcatttcccgcgctacctgaaagcg
atcaatgtgcggctggaaaaactgcgcgccgatcctgcgcgcgatgccaagctgatggcc
gaatggcagcaagcggccgcgccgtatctgcgtttcgccaaggaccgccaggccggcaag
aataccgatccgaaactggtcgaattccgctggatgctggaagagttgcgtgtgtccttg
tacgcccaggaattgcgcacgcccatgccggtatcggccaagcggctgcaaaaagtgtgg
gaatcgatgcagcgttaa
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