Janthinobacterium agaricidamnosum: GJA_1408
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Entry
GJA_1408 CDS
T03157
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
jag
Janthinobacterium agaricidamnosum
Pathway
jag02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
jag00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GJA_1408 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jag03021
]
GJA_1408 (rpoD)
Transcription machinery [BR:
jag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GJA_1408 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Dpoe2NT
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
CDG82061
UniProt:
W0V2F5
LinkDB
All DBs
Position
1554885..1557398
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AA seq
837 aa
AA seq
DB search
MKNTPKTLTLSAKVPRPASAQLAVPKTTLSYFIDNAQANPEAPSGTVTVVKKSRSRLIVA
PGSEAAPAEPAAEAVETAVPAEEAAPVKTPSVKIAPTVRKVTESAATAKVVVAARSKVVR
AKAEPAPVVIVTAGPAVSKTTDADALAAIDTSNYFLPTVKVPGRRGRKPSEFTPENDEVA
ALNAVERAELKAVSKARDRKAKGGLADALAGDAEATAADLERRRQQIKGLINMGKERGFL
TYAEINDQLPENIIDPEAIEGIIATFNDMGIAVYERAPDAESLLLTDNVATVTSDDEVEA
AAATALSTVDSDFGRTTDPVRMYMREMGAVALLTREGEIEIAKRIEGGLKDMIQAISACP
TTIAEIVALSQKIARDEVKVDEVVDGFVDLNEAAAPAPVVVSAPATLDGDEEEEEEEEED
GDANGGAAGFSSEQLAQLKKNALEKFATISTQYEKMRKAADGYGSKAYMKAQEAISQELL
GIRFTAKVVEKLCDTLRGQMEEVRHIERAVLELCVNKCGMPRAHFIKVFPGNECDLDWVD
GEVDCKYPYSAILGRNVPAVKELQKKMIDLQARVALPLADLRKINKQMAAGEKRARHAKR
EMTVANLRLVISIAKKYINRGLQFLDLIQEGNIGLLKAVDKFEYRRGYKFSTYATWWIRQ
AITRSIADMARTIRVPVHMIETINKMNRISRQIMQETGSEPDLATLAVKMEMPENKVREI
MKIAKEPISMETPMGEDGDSQLGDFIEDNTTLAPLDAALHASMRNVIKEVLDSLTPREAK
VLRMRYGVEMSNDHTLEEVGKQFDVTRERIRQIEAKAMSKLRQPSRSDKLKTFLTQN
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatacgccaaaaacattaacgttgtccgcaaaagttccccgtcctgcttcggcg
cagctggctgtaccgaaaacaactttatcttactttatcgataatgcgcaagcgaatcct
gaagcgcccagcggtactgtgacggtggtgaaaaaaagccgttcgcgcctgatcgtcgcg
cctggcagcgaagcggcgccggccgagccggcggctgaggcagtcgagaccgccgtgccg
gcggaagaagccgcgccggtcaagacgccgagcgtcaagatcgcgccgacggtgcgcaag
gtgactgaaagcgccgccaccgccaaggtggtggtggcggcccgctcgaaggtggtgcgg
gccaaggccgagccggcgccggtggtgatcgtcaccgccggcccggccgtcagcaagacc
accgacgccgacgcgctggccgcgatcgacacgtcgaattacttcttgcctaccgtgaaa
gtgccaggccgccgtggccgcaagccgagcgaattcacgccggaaaacgatgaagtggcg
gcactgaacgcggtcgaacgcgccgaactgaaggccgtatcgaaagcgcgcgaccgcaag
gccaagggcggcctggccgacgccctggccggcgatgccgaagcgacggcagcggacctg
gagcgccgccgccagcaaatcaagggcttgatcaacatgggcaaggagcgcggcttcctg
acctatgctgaaatcaatgaccaattgcctgaaaatattatcgatccggaagcgatcgaa
ggcatcatcgcgactttcaacgacatggggatcgcggtctacgaacgcgcgccggatgcg
gaaagtttgttgttgaccgacaacgtcgcgaccgtgaccagcgacgacgaagtcgaagcc
gccgccgcgaccgccttgtcgaccgtcgattccgacttcggccgcaccaccgacccggtc
cgcatgtacatgcgtgaaatgggcgccgtggcgctgctgacccgcgaaggcgagattgaa
atcgccaagcgcatcgaaggcggcttgaaagacatgatccaggcgatttccgcctgcccg
accacgatcgccgaaatcgtcgcgctgtcgcaaaaaatcgcccgcgacgaagtcaaggtc
gatgaagtggtcgacggcttcgtcgacctgaatgaagccgccgcgccggcgccggtggtg
gtgtcggccccggccacgctcgatggcgacgaagaggaagaagaggaagaagaggaagac
ggcgacgccaatggcggcgcggccggtttttcgagcgagcagctggcgcaattgaaaaag
aatgcgctggaaaaattcgccaccatttcgacccaatacgaaaaaatgcgcaaggcggcc
gacggttacggctcgaaagcctatatgaaggcgcaggaagcgatttcccaggaattgctg
ggtatccgcttcaccgccaaagtagtcgaaaagctgtgcgacaccttgcgcggccagatg
gaggaagtgcgccatatcgaacgcgccgtgctggaattgtgcgtcaacaaatgcggcatg
ccgcgcgcccacttcatcaaagtgttcccaggcaatgagtgcgacctggactgggtcgat
ggcgaagtcgattgcaagtatccgtacagcgccatcctcggccgtaacgtgcctgccgtc
aaagaattgcaaaagaaaatgatcgacttgcaggcgcgcgtcgccttgccgctggccgac
ctgcgcaagatcaacaagcaaatggctgccggcgaaaaacgcgcccgccacgccaagcgc
gaaatgacggtcgccaacttgcgcctggtcatttcgatcgccaagaaatacatcaaccgc
ggtttgcaattcctcgacttgatccaggaaggcaacatcggcttgctgaaagcggtcgat
aaattcgaataccgccgtggttacaagttctcgacctacgccacctggtggatacgccag
gcgatcacgcgttcgatcgccgacatggcgcgcaccatccgcgtgccggtgcacatgatc
gaaaccatcaacaagatgaaccgcatctcgcgccagatcatgcaggaaaccggcagcgag
ccggacctggcgacgctggcggtgaagatggaaatgccggaaaacaaggttcgcgaaatc
atgaagatcgccaaggagccaatctccatggaaacgccgatgggcgaagatggcgattcg
caactgggcgacttcatcgaagacaacaccacgctggcgccgctggatgccgcgttgcac
gcatcgatgcgcaacgtaatcaaggaagtgctcgattcgctgaccccgcgcgaagccaag
gtgctgcgcatgcgttacggcgttgaaatgtcgaacgaccacacgctggaagaagtgggc
aagcaattcgacgtgacccgcgagcggattcgccagatcgaagcgaaagcgatgagcaag
ctgcgccagccgtcgcgttccgacaagctgaaaactttcctgacccagaactaa
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