Janthinobacterium agaricidamnosum: GJA_1880
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Entry
GJA_1880 CDS
T03157
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
jag
Janthinobacterium agaricidamnosum
Pathway
jag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GJA_1880 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jag03400
]
GJA_1880 (recC)
Enzymes [BR:
jag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GJA_1880 (recC)
DNA repair and recombination proteins [BR:
jag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GJA_1880 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
CDG82516
UniProt:
W0V3R9
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All DBs
Position
2064699..2068106
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AA seq
1135 aa
AA seq
DB search
MAASVTPGLLILHGNQLEQLRAAVFQWLRNHPLAPLETDIFLVQSNGVAEWLKIALAEEI
GVCAATRIALPARLLWESYRGMLGRERVPGRSPFDKSPLTWRLMRLLPALLEQPVFAPLR
YFLADGDAERRLQLAERLADLFDQYQVYRADWLEDWASGLDQLRGARGAPLMLKDDQRWQ
AQLWREINSSVEPQQRASGRATIHTEFLRAIAAGAVPAGRLPRRVVLFGVSALPYQNLQA
LAALASHTQVLLAVPNPCQFYWGDIIEGRDLLRAAYKRQQQKNGSDLAQIPLEELHAHSH
PLLASWGRQGRDFIRMLDEFDEAAAAAGRDDSLRIDLFSAEDGASLLAQVHAAIRELRPL
SEHAGLPPEGGDRSIEFHVAHSVQREVEVLHDQLLLMFSRSEETGLRPRDVVVMVPDIDT
FTAAIHAVFGQHKRNDARFIPFEIGDVKDRSVNPLLVALEWLLRLPQQRCRQSEVRDLLD
VPALAARFGLGDDDLPTLGAWIEGARVRWGLDQQHRSGLGLGAALEQNTWIFGMRRMLLG
YASGDGGSFGGIEPYAEVGGLDAALAGSLAQLVEALLHWRAVLARVHTPSDWGVLARGLL
AAFFKPGDEADRLTLAQLEEALQGWLETCDSAAFDEDVPLAVLREAWLGALDEPTLNHQF
VSGGVTFCTLMPMRAVPFRIVCLLGMNDGDFPRRAPKADFDLLAQPGMARPGDRSRRDDD
RYLMLEALLAARDKLYVSWVGRNVRDNSEQPPSVLVSQLRDYLQAGWNLDLPALTTEHAL
QPFSRRYFEGGGLLTYAGEWRAAHADAAAADAAALPPFEIEPGLRLKLSELASFMRQPVK
YFFRRRLSVTFADMALVGEDEEPFALNALERYLLEDTLLDQASQPEALDQVRASLFERAE
KLHREGVLPIGLIGRQWQIQLVDALVPVRSAWLRLCERFPQPADKQAIVLDFDGLRIEDW
LDRLRSDGHGNTAWLMQISSKILDQAGQPRGDKLMLMWLRQLAAAAQGYPVTGHLVARDA
VVSMPPLAQAASRQALGALLALWREGMNHPLPTACKTALALVLEGDPRSVYDGGFEIAGE
SGELCLARLWPDFAALSAEQAWADCSRELYGPLVAWMKEHIAIAAIGGAEEGEGA
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggccgccagcgtgactccgggattactcattttgcacggcaaccagctggagcagttg
cgcgccgcggtgttccagtggctgcgcaatcatccgctggcgccgctggaaaccgacatc
ttcctggtgcagtcgaacggcgtggccgaatggctgaagatcgcgctggccgaggaaatc
ggcgtgtgcgccgcgacccgcatcgccttgccggcgcggctgctgtgggaaagctatcgc
ggcatgctgggccgcgagcgggtgccgggccgctcgccattcgacaagtcgccgctgacc
tggcgtttgatgcggctgttgccggccttgctggagcagccggtattcgcgccgctgcgt
tatttcctggccgacggcgatgcagaacggcgcttgcagctggccgaacggctggccgac
ttgttcgaccagtaccaggtctaccgcgccgactggctggaagactgggccagcggcctg
gaccagctgcgcggcgcgcgcggcgcgccgctgatgctgaaggacgaccagcgctggcag
gcgcaattgtggcgcgaaattaacagcagcgtcgagccgcagcaacgggcttccggccgg
gccaccatccacaccgaatttttgcgcgccatcgccgccggcgcagtgccggccgggcgc
ttgccgcgccgcgtggtgctgttcggcgtgtcggcgctgccgtatcagaatttgcaggcg
ctggcggcgctggccagccacacccaggtgctgctggcggtgcccaatccgtgccagttt
tattggggcgacatcatcgaggggcgcgacttgctgcgcgccgcctacaagcgccagcag
caaaagaacggcagcgacctggcgcagatcccgctggaagaattgcacgcccacagccat
ccgctgctggccagctggggccggcagggccgcgacttcatccgcatgctcgatgaattc
gatgaagcggcagcggcggccgggcgcgacgacagcctgcgcatcgatttgttcagcgca
gaggacggcgccagcctgctggcccaggtgcacgcggcgatccgcgaattgcgtccgttg
agcgagcatgccggcctgccgccggaagggggcgaccgttcgatcgaattccatgtcgcc
cacagcgtgcagcgcgaagtcgaagtgctgcacgaccagttgctgctgatgttcagccgc
agcgaggaaaccggcttgcgtccgcgcgacgtggtggtgatggtgcccgacatcgatacg
tttaccgccgcgatccacgcggtgttcggccagcacaagcgcaacgacgcccgtttcatt
ccgttcgagatcggcgacgtcaaggaccgcagcgtcaatccgctgctggtggcgctggaa
tggctgctgcgcctgccgcagcagcgctgccgccagagcgaggtgcgcgacttgctggac
gtgccggcgctggccgcgcgcttcggcctgggcgacgacgacttgccgacgctgggcgcg
tggatcgagggtgcgcgggtgcgctggggactcgaccagcagcatcgcagcggcctcggg
ctgggcgccgcgctggaacagaatacctggatcttcggcatgcgccgcatgctgctcggc
tacgccagcggcgacggcggcagcttcggcggcatcgagccgtacgccgaagtgggcggg
ctggacgccgcgctggccggctcgctggcgcaactggtggaagcgctgctgcactggcgc
gccgtgctggcccgggtgcatacgccgtccgactggggcgtgctggcgcgcggcttgctg
gcggcatttttcaagcctggcgacgaagccgaccggctcacgctggcgcagctggaagaa
gcgctgcaaggctggctggaaacctgcgacagcgccgccttcgatgaagacgtgccgctg
gcggtgttgcgcgaagcgtggctgggcgcgctcgacgagccgacgctgaaccatcaattc
gtctccggcggcgtgaccttttgcaccttgatgccgatgcgggcggtgccgttccgcatc
gtctgcctgctcggcatgaacgacggcgattttccgcgccgcgcgccgaaggccgatttc
gacttgctggcgcagccgggcatggcgcgtcccggcgaccgttcgcggcgcgacgacgac
cgctacctgatgctggaagcgctgctggccgcgcgcgacaagctgtatgtcagctgggtc
gggcgcaatgtgcgcgacaacagcgagcagccgccgtcggtgctggtgtcgcaattgcgc
gattacctgcaagccggctggaacctcgatttacccgcgctgaccaccgaacatgcgttg
cagccgttcagccgccgctatttcgagggcggcggcttgctgacctatgccggcgaatgg
cgcgccgcccatgccgatgccgccgcagcggacgccgccgccttgccgccgttcgagatc
gaacccggcctgcgcctgaagttgagcgaactggccagcttcatgcgccagccggtcaag
tattttttccggcgccgcctcagcgtgacctttgccgacatggccctggtcggcgaagac
gaagaaccgttcgcgctgaacgcgctggaacgctacttgctggaagacaccctgctggac
caggccagccagccggaagcgctggaccaggtgcgggccagcctgttcgaacgggctgaa
aaactgcaccgcgaaggcgtgctgccgatcggcctgatcggcaggcagtggcaaatccag
ctggtcgatgcgctggtgccggtgcgcagcgcctggctgagattgtgcgaacgctttccg
cagccggccgacaaacaggcgatcgtcctcgatttcgacggcttgcgcatcgaggattgg
ctggaccggctgcgcagcgacggccatggcaacacggcgtggctgatgcagatttcatcg
aagatactggaccaggcgggccagccgcgcggcgacaaattgatgctgatgtggctgcgc
cagctggccgccgccgcgcagggctatccggtcaccggccacctggtggcgcgcgacgcc
gtcgtcagcatgccgccgctggcgcaagcggcatcgcggcaggcgctgggcgccttgctg
gccttgtggcgcgaaggcatgaaccatccgctgccgaccgcctgcaagaccgcgctggcg
ctggtgctggagggcgatccgcgcagcgtctacgatggcggtttcgagattgccggcgag
tccggcgaactgtgcctggcgcgcctgtggccggatttcgcggcgctgtcggccgagcaa
gcgtgggccgactgcagccgggaattgtatggcccgctggtggcctggatgaaagagcat
atcgccatcgcggcgatcggcggcgctgaagagggagagggcgcatga
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