Janthinobacterium agaricidamnosum: GJA_2398
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Entry
GJA_2398 CDS
T03157
Symbol
ybbB
Name
(GenBank) tRNA 2-selenouridine synthase
KO
K06917
tRNA 2-selenouridine synthase [EC:
2.9.1.3
]
Organism
jag
Janthinobacterium agaricidamnosum
Brite
KEGG Orthology (KO) [BR:
jag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
jag03016
]
GJA_2398 (ybbB)
Enzymes [BR:
jag01000
]
2. Transferases
2.9 Transferring selenium-containing groups
2.9.1 Selenotransferases
2.9.1.3 tRNA 2-selenouridine synthase
GJA_2398 (ybbB)
Transfer RNA biogenesis [BR:
jag03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
GJA_2398 (ybbB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhodanese
AAA_33
AAA_22
SMC_N
AAA_18
FtsK_SpoIIIE
RsgA_GTPase
ACT_6
CoaE
AAA_23
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
CDG83029
UniProt:
W0V2I4
LinkDB
All DBs
Position
complement(2630625..2631680)
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AA seq
351 aa
AA seq
DB search
MKYPEILGFDQVLPQLGSFDTIIDARSPSEFALDHVPGAINCPVLDDVQRIEVGTLYKQV
SAFDAKKVGAAMIAKNIGHYIDTLWRGQPREWRPLVYCWRGGNRSGAMVHILARIGWPVV
QLEGGYKAYRNHVNQALALPPQAHFKVICGSTGSGKSRLLETLAASGAQVLDLEQLAAHR
GSVLGNLPSQPQPSQKAFESAIWQRLRGFDTARPVFVEAESRKIGALRIPDALMEHMRAS
SCIALELPREQRVRLLMEDYAHFTQHPAVLNAQLDCLLSLYGRDKIGRWQAMAQAGQMAP
LVEELLVQHYDPAYAKSIDRNFLQYSHAESLLLDDISAAAFSAAALRLNCA
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatcctgaaatactgggtttcgaccaggtgctgccccagctgggcagtttcgat
accatcatcgacgcccgcagcccgtccgaatttgcgctcgaccatgtgcccggcgcgatc
aattgcccggtgctggacgacgtccaacgcatcgaagtcggcaccttgtacaaacaggtc
agcgccttcgatgccaagaaagtcggcgcggcgatgatcgccaagaatatcggccattac
atcgacaccttgtggcgcggccagccgcgcgaatggcggccgctggtgtattgctggcgc
ggcggcaaccgcagcggcgcaatggtgcatatcctggccaggataggctggccggtggtc
cagctggaaggcggttacaaggcttaccgcaaccacgtcaaccaggcgctggcgctgccg
ccgcaagcgcacttcaaggtgatttgcggcagcaccggcagcggcaagagccgtttattg
gaaacgctggcggccagcggtgcgcaagtgctggacctggaacaattggcggcccatcgc
ggctcggtgctgggcaacttgccgagccagccgcaaccgtcgcaaaaagcatttgaaagc
gcgatctggcagcggctgcgcggtttcgatacggcacggccggtgtttgtcgaagcggaa
agcaggaagatcggcgcgctgcggatacccgatgcgctgatggaacacatgcgcgcgtca
agctgcatcgcgctggagttgccgcgcgaacagcgggtgcgcttgctgatggaagattac
gcccacttcacgcagcatccggcagtgctgaatgcgcagctggattgcctgctcagcctg
tatggccgcgacaagatcggccgctggcaagcgatggcgcaagccggacagatggcgcca
ctggtcgaggaattgctggtccagcattacgacccggcgtacgccaagtcgatcgaccgt
aacttcctgcaatacagccatgccgaatcactgctgctggacgatatttccgcagcggca
ttcagcgcggccgcattgcgcctgaactgcgcctga
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