Janthinobacterium agaricidamnosum: GJA_4252
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Entry
GJA_4252 CDS
T03157
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family protein
KO
K03086
RNA polymerase primary sigma factor
Organism
jag
Janthinobacterium agaricidamnosum
Pathway
jag02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
jag00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GJA_4252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jag03021
]
GJA_4252
Transcription machinery [BR:
jag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GJA_4252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Ank_2
Sigma70_r3
Ank_5
Sigma70_r1_2
Ank_4
Ank
Ank_3
Motif
Other DBs
NCBI-ProteinID:
CDG84862
UniProt:
W0VC28
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All DBs
Position
4587023..4589605
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AA seq
860 aa
AA seq
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MISTSVPSILPLNRFLKMAVMAGIESAIQIHIDRGDDLNARDGNGLTLLMLSAGRNKFSM
CKFLLDAGVDKDLLDPSGKTAYAIAVAAGAHEAVAILEAAVTLQLGVFGAQGLSMIDPPD
EHIMPLESQALECTTSLAAVDVTQTDTVPHNFHFDAKELSELESVSEFDLIGWEPEEDAS
PPEVDPSVAQAASAIQVSISKYEPIDSSEDWEDIDVYLPERSLPLARTSDAEARELLRLL
LLRAAREGSVPSAAVKALSLNDDQSANPEAEALLTMVINDVGAEVDERFEYAKPDENFEV
YVNPEETPDEEEIVTNAFAFIDNLASRYSEPLRIYQKEFQRERLISAEEEVFLGKAMEVQ
MERALDALAAWPRGIDLTLAAGNIIKTKQRPLIWLSLGPIEAEPNLESTSEGESDADIAA
TDQAEEELEADEESQFDSDLPLGSFTSEFSDAMDRLASLPVGPTQRGANWAAIRETLSSL
RLNRRFLLELANAETDGAQESAMQYASAIKGYQIARERMVAANLKLVFHLAKKHLYSGEP
LDDLAQEGNIGLLKAVERYDWRRGFKFSTYATWWIRQHIGRYIADKCRTIRVPVHVYGSV
QRLARETREFESENGHSPELNEIAARLDMPAYKVSALQRLAPEPISIHDLSIDELIAADA
LSDFVSPDPFDIAFKSDVHKTIDRVLATLKPKEAQIIRLRYGIGINDSLTLDDIGQRYEV
TRERIRQIEAKAIQKLMQPSRIDALSNVFFGYPFSKESKGQENSSLSSRSKPSADVNSIQ
SQLAARPTPDGTSSPVKTSSIDKFLTQAMALGVSVIDERKEASGKIWISFIETPDGRYKK
LARKLLALGFEFIPEKGYWK
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcacaagcgtccctagtatccttcctcttaaccgtttcctaaaaatggcggtc
atggctggtatcgaaagcgccatccaaattcacatcgaccggggcgacgacctcaatgct
cgtgatggaaatggactcacccttctcatgctatcggcgggccgcaataaattttcgatg
tgcaaatttctgcttgatgcaggagtagacaaagacctgcttgatccctctggaaaaact
gcgtatgccatcgcggtcgccgctggcgcgcacgaagcagtagcaatattggaggcggcg
gtcaccttgcagcttggggtgtttggtgctcaaggtctgagcatgatcgatcctccagat
gaacacatcatgcctctggaatcacaagcgcttgaatgcaccacatctcttgccgcagtt
gacgtgactcaaactgatacggttccacataattttcacttcgacgcaaaggaattgagc
gaactagaaagcgtatccgagtttgacttgatcggctgggagccagaggaggacgcgtct
cctcccgaagtcgatccgtctgtcgcccaagctgccagcgcgatccaggtatccatttcg
aaatatgagcccatagactcgtcggaagactgggaagacattgatgtctacctaccagag
cgatcgctaccgctcgctcgcactagtgatgcagaggcccgcgaactgctacgtttattg
ctgcttcgagccgctcgtgaaggcagtgtgcctagcgctgcggtcaaagccttgtcgctg
aacgatgaccaatcggcaaacccagaagcggaggcgctgctaaccatggtcatcaatgac
gttggcgccgaagtcgatgagcgattcgaatacgccaagcctgacgaaaatttcgaggtc
tacgtcaaccctgaggaaacaccggacgaagaagaaatagttaccaatgccttcgcgttt
attgacaacttggcctcacgctactcggagcccttgcgcatataccaaaaagaatttcag
cgcgagaggctaatttctgccgaagaagaagtcttcctaggtaaagcgatggaagtccaa
atggaacgagcacttgacgccctggcagcttggccacgcgggattgatctgacactggcc
gccggcaatattatcaagaccaaacaaaggcctctgatttggctatcgcttggaccgatc
gaagctgagccaaaccttgaatcaacatctgaaggcgaaagcgatgcagatatcgcggct
acagatcaggcggaagaggaactcgaggccgatgaagagtcgcagttcgatagtgacctc
ccactcggtagcttcacgtcagaattttcggatgcgatggacaggctcgctagtcttcca
gtaggaccaacgcagcgcggagcgaattgggcagcaatccgtgaaacgctgtcgtcgctc
cgactgaatcgtcgcttccttctcgagctggcaaatgccgaaaccgacggtgcccaagaa
tcggcgatgcaatatgccagcgcgataaagggataccagatcgctcgcgaacgaatggtg
gctgccaacttgaagctcgtgttccatcttgccaaaaagcatctttatagcggagagccc
ttggacgacttagcacaagaaggaaatattggcctattgaaagccgtcgagcgctacgat
tggcggcgtggcttcaagttctccacctatgccacttggtggatacgccaacacattggg
cgctacatcgcagacaaatgccggactattcgcgttccggtccatgtctatgggagtgtt
cagcgcctagctcgtgaaacgcgcgaatttgaatcagagaatggacattcgcctgagctc
aatgaaatagcggcccgcttagacatgcctgcttacaaagtgtctgcacttcagcgactc
gcgcctgaaccgatatcaatacatgacctatcaatcgatgaactaatagccgccgatgct
ctgtccgatttcgtttcaccagacccttttgacattgcgttcaaatccgatgtgcacaaa
acaattgacagagttttggctacgctcaagccgaaagaagcacaaattattcgactgcgc
tatggcatcgggattaatgactcattgacgctagacgacatcggacaacgatatgaagtc
acaagggagcgtattcgccagattgaagccaaagctatccagaagttgatgcagcctagc
aggattgatgctttatcgaacgtgttttttggctatcctttttccaaagagagcaagggg
caagagaacagctccctgtctagcagatccaagccgtcagcagacgtcaactcgatacag
tcccaacttgcggctaggccgactcctgatggcacgtcatcacctgtaaagacgtcaagc
atcgataaattcctaacacaggctatggccttaggtgtttctgtgatcgacgaacgcaaa
gaagcatcaggaaaaatatggatcagttttattgaaacgcccgacggccgttacaaaaaa
ttagcccgtaagctgcttgctttggggttcgaattcatcccagaaaaaggttattggaaa
tga
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