Janthinobacterium agaricidamnosum: GJA_4865
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Entry
GJA_4865 CDS
T03157
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
jag
Janthinobacterium agaricidamnosum
Pathway
jag02020
Two-component system
jag02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
jag00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GJA_4865 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GJA_4865 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jag03021
]
GJA_4865 (rpoN)
Transcription machinery [BR:
jag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GJA_4865 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
CDG85469
UniProt:
W0V9I8
LinkDB
All DBs
Position
complement(5233232..5234725)
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AA seq
497 aa
AA seq
DB search
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDHSLRL
LSDGALSPLSAPSEGPPQPPGQDGAGPDAPGAAEAEHFEGEGASETSTAADNTDSDWSEA
GRSKAPDDEDARPQLEASHCTLREHLMEQVRVTVLELRDRALVELIIDALDDNGYLEEPL
EEILARLPAELEIDPDELHIALSLLQSFDPPGVGARNASECLALQIKRLPHIALVTRRMA
LQIVEQHLTWFAQRDFNKLKKALACDDEDLREAQAVIRQCNPHPGAVFASDVSDYVVPDV
VVKRSRNGWQVSLNHDVMPRLRVNAMYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDT
ILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPHGMFEL
KYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVA
KYREALKIPPVSLRKSL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaatctttgcaactgcgcacttcgcaacatctggcgctgacgccgcaattgcag
caatcgatacggctgctgcaattgtctaccctggaattgcaccaggaactggaacagttg
ctgaccgacaatcccttgctggagcgcctggacgatccgctcgaccattcgctgcggctg
ctgtccgatggtgcgctgagcccgcttagcgcaccgtctgaagggccgccgcagccgcca
ggccaggatggcgccgggccggatgcgccgggcgcggccgaggccgagcatttcgaaggc
gagggcgccagcgagaccagcaccgcggccgacaataccgacagcgactggagcgaagcg
ggacgcagcaaggcgcctgacgacgaggatgcccggccgcagctggaagcgagccactgc
acgctgcgcgaacacttgatggagcaggtgcgcgtgaccgtgctggaattgcgcgaccgc
gcgctggtcgagctgatcatcgacgcgctcgacgacaacggctacctggaagagccgctg
gaagaaatcctggcgcgcctgccggccgaactggaaatcgatcccgacgaattgcatatc
gcgctgtcgctgctgcaaagcttcgacccgccgggcgtcggcgcgcgcaatgcgtcggaa
tgcctggcgctgcaaatcaagcgcctgccgcacatcgcgctggtgacgcggcgcatggcc
ttgcagatcgtcgaacagcacctgacctggtttgcgcagcgcgacttcaacaagctcaag
aaagccctggcttgcgacgacgaagacttgcgcgaagcgcaggcggtgattcgccaatgc
aatccgcacccgggcgccgtgttcgcgtcggacgtgtccgattacgtggtgccggacgtg
gtcgtcaagcgctcgcgcaatggctggcaagtcagcctgaaccacgacgtgatgccgcgt
ttgcgggtcaacgcgatgtacgccaacctgctgaaacagggcaagggcgagggcgcgatg
ggcgcgcaattgcaggaagccaagtggctgatcaagaatatgcgccagcgtttcgacacc
attttgcgggtcgcgcaagcgatagtagaacgacaaaagaattttttctcgcatggagcg
gttgccatgcggccccttgtgcttcgtgaaatagctgatacactgggactacacgagagc
acgatctctcgggtaacaacccagaaatacatgctgaccccgcacggcatgtttgagttg
aaatatttctttggtagccacgtcgccaccgaagcgggcggcgaagcgtcgtcgacggcg
atacgggcactgatagtgcaattgacaggagctgaagaccctaaaaatcctttatccgac
agtaagattgccgacatgctgggggaacaaggcatggtgattgcgcgacgcactgttgcc
aaataccgggaagcgctgaaaattccgccagttagcctgcgcaaatctttatag
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