Janthinobacterium agaricidamnosum: GJA_4997
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Entry
GJA_4997 CDS
T03157
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jag
Janthinobacterium agaricidamnosum
Pathway
jag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GJA_4997 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jag03021
]
GJA_4997 (rpoC)
03400 DNA repair and recombination proteins [BR:
jag03400
]
GJA_4997 (rpoC)
Enzymes [BR:
jag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GJA_4997 (rpoC)
Transcription machinery [BR:
jag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GJA_4997 (rpoC)
DNA repair and recombination proteins [BR:
jag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GJA_4997 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
PYNP_C
Myosin_VII_N
Motif
Other DBs
NCBI-ProteinID:
CDG85600
UniProt:
W0VD66
LinkDB
All DBs
Position
complement(5369042..5373298)
Genome browser
AA seq
1418 aa
AA seq
DB search
MKALLDLFKQVQQNETFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIHRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKNEGMMFPDVSEVIRAYDNK
EVELTTRVTVRITEYPKNAETGEFEKTITRYETTVGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADKLMQSGFRLATRAGISICVDDMLVPPQKVTLIATAES
EVKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEDVTRRDGSKSTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTMNGTVMKALVEGGEVIEPLRDRI
LGRVVVHDVVNPETQETLYEAGTLMDEDMVEEIERLSIDEVKVRTPLTCDTRFGLCAKCY
GRDLGRGLLVNAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTIR
FTATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMVIKAGTALA
TWDPLTRPIITEYAGQVRFENVEEGVTVARQVDEVTGLSTLVAIDAKRRGSLTKTLRPQV
KLINDANEEVKIAGTEHSVAIGFQVGALIMVKDGQQVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVNAGDTNYIVGEQVERSELLDENDRVTSENKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARKEKEAWEVEE
RQALLLAEKASMAGEAAEALQDIETQAAAAAAQHDNEA
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctcttcaagcaagttcagcaaaacgaaaccttcgacgcgatc
aaaatcggtctggcttcgcctgaaaaaatccgttcgtggtcctacggcgaagtcaaaaag
ccggaaaccatcaactaccgtaccttcaagcctgagcgcgacggcttgttctgcgccaag
atctttggaccgatcaaggattacgaatgcctgtgcggtaaatacaagcgtttgaaacac
cgcggcgtgatctgcgaaaaatgcggcgttgaagtgacgctggcgaaagttcgccgcgag
cgcatgggccacatcgagctggcctcgccgaccgcccacatctggttcctgaaatccctg
ccgtcgcgtctgggcatggtgctcgacatgaccctgcgcgatatcgaacgtgtgttgtac
tttgaagcatatgtcgtgaccgatccaggcatgactccgctgaaaaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgatttcaccgcattcatg
ggcgccgaaggcatccgcgaattgctgcgctcgatcgacatccaccgcgatgccgaaacc
ctgcgcgtggaattgaaggaatcgaaatccgaagccaagatcaagaaatacgccaagcgc
ctgaaagtgctcgaggcattccagcgttcgggcatcaagcctgactggatgatcatggaa
gtgctgccggtgctgccgccggaattgcgtccgctggtaccgctcgatggcggccgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgcctgaaa
cgcctgatggagctgcgtgctccagaaatcatcacgcgcaacgaaaagcgcatgctgcaa
gaagcggtcgattcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgccaac
aagcgtccgctgaaatcgctggccgagatgatcaagggtaaaggcggccgtttccgtcaa
aacttgctgggtaaacgcgtcgactactcgggccgttcggtcatcgtggtgggtccgcaa
ttgaaactgcatcagtgcggcttgccgaaactgatggcgctggaactgttcaagccattc
attttcaataaactggaattgatgggcctggcaaccacgatcaaggccgccaagaagctg
gtcgaaatccaggaaccggtggtgtgggacatcctggaagacgtgatccgtgaacatccg
atcatgttgaaccgtgcgcctacgctgcaccgcctgggtatccaggcattcgagccagtg
ctgattgaaggcaaggccatccagttgcacccgctggtctgcgccgcattcaacgccgac
tttgacggcgaccaaatggcggttcacgtaccactgtcgatcgaagcgcagatggaagcg
cgtaccctgatgctggcatcgaacaacatcctgttcccatcgaacggcgaaccgtcgatc
gtgccgtcgcaggatatcgtgctcggtctgtactacgcgacccgcgaagcgatcaacgcg
aagaacgaagggatgatgttccctgacgtgtccgaagtgatacgcgcctacgataacaag
gaagtcgaactgaccacccgcgttaccgtgcgtatcaccgagtacccgaaaaacgccgaa
acgggcgaattcgaaaaaaccatcacccgctacgaaaccacggtcggccgtgcgatcctg
tccgaaatcctgcctaaaggcttgccgttctcggtactgaaccgcgcgctgaaaaagaaa
gagatttcgaagctgatcaacacctcgttccgcaagtgcggcctgcgcgccaccgtggtg
ttcgccgacaagctgatgcaatcgggcttccgcctggcgacccgcgcaggtatttcgatc
tgcgtcgacgacatgctggtgccgccacaaaaagtgaccctgatcgcgaccgccgaatcg
gaagtcaagcagatcgaacagcaatacgcgtccggtctggtgaccgccggcgagcgttac
aacaaggtagtcgatatctggggcaaaacctcggatgaagtcggcaaggccatgatggac
cagctcaaggtcgaagacgtgacccgccgcgacggcagcaagtcgacccaggaatcgttc
aacgccatttacatgatggccgactccggcgcgcgcggttccgcggcgcagattcgccag
ttggccggtatgcgcggcctgatggcgaaaccggacggctcgattatcgaaacgccgatt
accgcgaacttccgcgaaggcctgaacgttttgcagtacttcatttcgacccacggcgct
cgtaaaggtctggccgatacggcgctgaaaaccgcgaactcgggttatttgacccgtcgt
ctggtcgacgtgacgcaagacctggtggtgatcgaggacgattgcggcaccatgaacggc
accgtcatgaaggcgctggtcgaaggtggtgaagtcatcgaaccgttgcgcgaccgtatc
ctcggccgcgtcgtggtgcacgatgtcgtcaaccctgaaacccaggaaacgctgtacgaa
gccggcacgctgatggacgaagacatggtcgaagagatcgagcgtctgtcgatcgacgaa
gtcaaggtccgtacgccactgacgtgcgacacgcgcttcggcctgtgcgccaagtgctat
ggacgcgacctgggccgtggcttgctggtcaatgccggcgaagcagtcggcgtggtggcg
gcgcagtcgatcggtgagcctggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcgtcgcgtgcggcagtggcatcgtcggtggaagccaaatcgaacggcaccatccgc
ttcacagcaaccatgcgttacgtgaccaacggcaagggcgcgcaaatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgaccatggccgcgagcgcgagcgtcataaggtaccg
tacggcgcgacgctgatcgtcaaggacggcatggtcatcaaggccggtaccgccctggcg
acgtgggatccgctgacccgtccgatcattaccgaatacgccggtcaagtgcgtttcgag
aacgtcgaagaaggcgtcaccgtggcccgccaggtcgacgaagtcaccggcctgtcgacc
ttggtcgcgatcgatgcgaaacgtcgcggttcgctgaccaagaccttgcgtccgcaagtc
aagctgatcaacgacgccaacgaagaagtcaagatcgccggcaccgaacattcggtggcg
atcggcttccaggtcggcgcgctgatcatggtgaaagacggccagcaagtgtcggtgggt
gaagtgctggcgcgtatcccgaccgaatcgcaaaaaacgcgcgacattaccggtggtttg
ccacgggttgccgagctgttcgaagcgcgttcgccgaaagacgccggcatgctggcggaa
gtcaccggtacggttgccttcggtaaagaaaccaagggcaagcaacgcctggaaatcacc
gacatggacggcaacaagcatgagttcttgatcaccaaggacaaacaagtgctggtgcat
gacggccaagtcgtgaacaagggcgagatgatcgtggacggcccggccgatccgcaagac
atcctgcgtttgctggggatcgaagcgctggcgcgttacatcgtcgacgaagtgcaagac
gtgtaccgtttgcaaggcgtgaagatcaacgacaagcacattgaagtgatcgtgcgtcag
atgctgcgccgtgttcagatcgtcaatgccggcgacaccaactacatcgttggcgagcag
gtggagcgttcggaattgctggacgaaaacgatcgcgtgacgtcggagaacaagatccct
gcgacctacgaaaacgtcttgctgggtattaccaaggcttccttgtcgaccgattccttc
atttcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggc
aagcgcgatggtttgcgcggcctgaaagaaaacgtcatcgtcggccgcctgatacctggc
ggtacgggcctggcattccaccgcgcacgcaaagagaaagaagcgtgggaagtggaagag
cgtcaagcgctgctgctggccgaaaaagcctcgatggccggcgaagctgccgaagcgttg
caagacatcgaaacgcaagcggctgccgcagccgcacaacacgacaacgaagcgtaa
DBGET
integrated database retrieval system
