Janthinobacterium agaricidamnosum: GJA_923
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Entry
GJA_923 CDS
T03157
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jag
Janthinobacterium agaricidamnosum
Pathway
jag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJA_923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jag03019
]
GJA_923
Enzymes [BR:
jag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GJA_923
Messenger RNA biogenesis [BR:
jag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GJA_923
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CDG81579
UniProt:
W0UYE5
LinkDB
All DBs
Position
1023908..1025563
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AA seq
551 aa
AA seq
DB search
MRQAIAWPAAQRSTKRGLRPEKCCLLKKVRLPAVREHTKKSMSETEFTPLPAATASGATP
EAAAVTAVADAPAAAEVMFADFGLAPEILRALTDQGYTHPTPIQAQAIPIVLQGRDVMGA
AQTGTGKTAGFSLPIIQLLLAHASSSMSPARHPVRALILTPTRELAVQVAENVKAYAQHT
PLRSTVVFGGMDMKPQTVILRNGVEIVIATPGRLLDHVEQKNISLGQVQMLVMDEADRML
DMGFLPDLQRIINMLPKQRQNLMFSATFSPEIKKLASTFLNNPQLIEVARSNQTADKVTQ
VVYKVAEDQKVAVVAHLLRQRDLKQVIVFSNTKIGASRLTRVLEQEGMRATAIHGDKTQQ
ERMAALEAFKNGEIDVLVATDVAARGLDISDLPCVINFDLPYNAEDYVHRIGRTGRAGAS
GDAISIFSDKDERLLTDIEKLIKQTIKRGELLGFVPSSGVRDAAERRPRRTEGESRPPRS
GADAEVRPAGSRAPERGSRPFAAGPRRDKVDPWFLKPYEPAKTVAPVAVNNLPPAKPKQK
VAALLGGLLKS
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
gtgcggcaagcgatagcgtggccggctgctcaacgaagtacaaaacgcggtctgcgcccg
gaaaaatgttgtttattgaagaaagtacggcttcctgcagtacgggagcacaccaaaaaa
tctatgtctgaaactgagttcacccctttacctgccgccaccgcgtccggcgccactcct
gaagccgctgccgtcaccgctgtcgccgatgcgccagccgccgctgaagtcatgtttgcc
gatttcggcctggcgccggaaatactccgcgcactgaccgatcagggctatacccatccg
acgccgatccaggcgcaagcgatcccgatcgtgttgcaaggccgcgacgtgatgggcgcc
gcgcaaaccggcaccggcaagaccgccggtttttccttgcccatcatccagttgctgctg
gcccacgccagcagcagcatgtcgccggcgcgccacccggtgcgcgcgctgatcctgacc
ccgacccgcgaactggcggtgcaggtggcggaaaacgtcaaggcgtacgcccagcacacg
ccgctgcgctcgaccgtggtattcggcggcatggacatgaagccgcaaaccgtgatcctg
cgcaacggcgtcgaaatcgtcatcgcgaccccgggccgtctgcttgaccacgtcgagcaa
aagaatatcagcctgggccaggtgcaaatgctggtgatggatgaagccgaccgcatgctg
gacatgggtttcttgccggacttgcagcgcatcatcaacatgttgccgaaacaacggcaa
aacctgatgttttcggcgaccttctcgccggaaatcaaaaaactggccagcaccttcctg
aataacccgcaattgatcgaagtagcgcgcagcaaccagaccgccgacaaggtgacccag
gtagtctacaaggtcgcggaagaccagaaagtcgccgtggttgcgcatttgttgcgccag
cgcgacttgaagcaagtcatcgtgttttccaataccaagatcggcgcctcgcgcctgacc
cgcgtgctggagcaggaaggcatgcgcgccaccgcgatccatggcgacaagacccagcaa
gaacgcatggcggcgctggaagcgtttaaaaatggcgagatcgacgtgctggtggcgacc
gacgtcgcggcgcgcggcctcgatatttccgatttgccttgcgtgatcaacttcgacttg
ccgtacaacgccgaggattatgtgcaccgcattggccgtaccggccgcgccggcgcgtcg
ggcgatgcgatttcgatcttttcggacaaggatgagcgcttgctgaccgatatcgaaaaa
ttgatcaagcaaaccatcaagcgcggcgaactgcttggtttcgtgccatcgtcgggcgtc
cgcgacgcggccgagcgccgtccgcgccgtactgaaggcgagtcccgcccgccacgctca
ggcgccgatgccgaggtacggccagccggcagccgtgcgccggagcgcggcagccgccca
ttcgccgccggcccgcgccgcgacaaggtcgatccatggttcctgaagccgtacgagcca
gccaagacggtggcgccggtggctgttaataatttgccgccggccaagccgaaacagaag
gtggcggcattgctgggtggtttattgaagtcgtaa
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