Janthinobacterium sp. HH102: JAB4_012380
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Entry
JAB4_012380 CDS
T08624
Symbol
rtcB_2
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
jah
Janthinobacterium sp. HH102
Brite
KEGG Orthology (KO) [BR:
jah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
jah03016
]
JAB4_012380 (rtcB_2)
Enzymes [BR:
jah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JAB4_012380 (rtcB_2)
Transfer RNA biogenesis [BR:
jah03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JAB4_012380 (rtcB_2)
Prokaryotic type
tRNA splicing ligases
JAB4_012380 (rtcB_2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QOU71822
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All DBs
Position
1371581..1372816
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AA seq
411 aa
AA seq
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MKNEEYEVLHTEGSRPVKMWTRGVPVEEAAKKQLRNTATLPFIYKHIAVMPDVHLGKGST
IGSVIPTLGAVIPAAVGVDIGCGMMAAKTTLTASDLPDNLGPLRSAIERAIPHGMSPKTR
GHRGRDEGSWQTPPSVVDAAWLQLKDEFDAICLKTPKLKNTNNYRHLGTLGSGNHFVEVC
LDEQGSVWFMLHSGSRGVGNAIGTHFIELAKQDMRTHFINLPDQDLAYLAEGTQHYDDYV
EAVGWAQRFARNNREVMMQNLIAAVRTVIHKPFQTHVEAVNCHHNYVQKEHHFGKDVLVT
RKGAVSARAGELGIIPGSMGAKSFIVRGKGNADSFHSCSHGAGRTMSRTEAKRRFNLDDQ
IRATQGVECRKDENVIDEIPMAYKDIDAVMLAQRELVDVVHILKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgaagaatacgaagttctgcataccgaaggcagccgtcccgtgaaaatgtgg
acgcgtggcgtgcctgtcgaagaagcggccaaaaaacaattgcgcaacacggcgaccctg
ccgttcatctacaagcacatcgccgtcatgcccgacgtccacctgggtaaagggtcgacc
atcggcagcgtgatccctaccctgggtgccgtgattccggcggcagtgggcgtcgatatc
ggttgcggcatgatggcggcgaaaaccacgctgacggccagcgatttgcccgataatctg
gggccgctgcgcagcgccatcgagcgcgccattccacacgggatgtcgccgaagacgcgc
ggtcaccgcggccgcgacgagggttcctggcagacgccgccctcggtggttgatgccgcg
tggctgcagctgaaggatgaattcgacgccatctgcctgaaaacgcccaagctgaagaac
acgaataactatcgtcacctgggaactttgggcagcggtaaccacttcgtcgaagtctgt
ctcgatgaacagggttctgtatggttcatgctgcattccggttcgcgcggcgtgggcaat
gccatcggtacgcatttcatcgaactggccaagcaggatatgcgtacccacttcatcaac
ctgcccgaccaggacctggcctatctggccgaaggcacgcagcattacgacgattacgtg
gaagcggtgggctgggcccagcgtttcgcgcgcaacaaccgcgaagtgatgatgcaaaac
ctgatcgcggccgtgcgcacggtcatccataagccgttccagacgcatgtggaagccgtc
aactgccaccataactatgtgcagaaggagcaccacttcggcaaggacgtgctggtcacg
cgcaagggcgccgtctcggcccgcgccggcgaactggggatcattcccggttccatgggc
gcgaagagttttatcgtgcgcggcaagggtaatgcggacagtttccatagctgcagccac
ggcgcgggacgcacgatgagccgtacggaagcgaagcggcgcttcaacctggacgaccag
atccgcgccacgcaaggcgtggaatgccgcaaggatgaaaacgtgatcgatgaaattcca
atggcctacaaggatatcgatgcggtgatgctggcacagcgcgagctggtcgacgtcgtg
catatcctgaagcaggtcgtttgcgtcaaaggttaa
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