Janthinobacterium sp. HH102: JAB4_044890
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Entry
JAB4_044890 CDS
T08624
Symbol
dbpA_3
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
jah
Janthinobacterium sp. HH102
Pathway
jah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JAB4_044890 (dbpA_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jah03019
]
JAB4_044890 (dbpA_3)
03400 DNA repair and recombination proteins [BR:
jah03400
]
JAB4_044890 (dbpA_3)
Enzymes [BR:
jah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JAB4_044890 (dbpA_3)
Messenger RNA biogenesis [BR:
jah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JAB4_044890 (dbpA_3)
DNA repair and recombination proteins [BR:
jah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JAB4_044890 (dbpA_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
MSSS
PcrA_UvrD_tudor
DUF5739
Motif
Other DBs
NCBI-ProteinID:
QOU75007
UniProt:
A0A853T5M0
LinkDB
All DBs
Position
complement(4987262..4988953)
Genome browser
AA seq
563 aa
AA seq
DB search
MATTISAVNEAGSARQRKIQRLLRSVFGVARLRAGQQDVIDSVLAGRDTLAIMPTGSGKS
LCYQLPAALLPGATVVVSPLISLMKDQLEKLHELGITAVQLNSSLSRAEEDDAIARIAQG
GRLIIFCTPERLTNTAFLSLLAGAPPSLVVIDEAHCISQWGHDFRPAYLDIAAALRALGR
PPVLALTATATGEVMDDIDTQLEARKLNVINTGIYRANLRYRVIQVTNAGEKQDEVLRLL
RETPGVGIVYAATVKAVEDLAARLEALGESVTCYHGKLAARERKHHQDLFMNGERRIMVA
TNAFGMGIDKPDTRFVIHLQVPANLEAYYQESGRAGRDGLPADCTLLYFQEDKRVQQFFL
AKHYPTAEELAAIVAAAQELPATFTFAALASSLPDFSDGHLKVCLKLLKDGKLLRQDRKL
GYSLKAPSASSPAYAQLAQIYVDKQERDKQALEQMVAYAQSGLCRWKLLLDYFGDAGDFQ
RCCTCDNCLSPPALAAPISLDELPPVPSQAPSPPPAPQIAVGSRVRVPRYQIGTVLSVAG
DQVTIAFPENTTRTFMAEFVAPA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaccatttctgcagtgaacgaagcgggcagcgcccgccagcgcaagatccag
cgtctgctgcgctccgtatttggcgtggcgcggctgcgcgcgggccagcaggacgtcatc
gacagcgtgctggccggacgcgacaccctggccatcatgcccacgggcagcggcaagtcg
ctgtgctaccagctacccgccgccctgttgccgggcgccaccgtggtggtgtccccgctg
atttctctgatgaaggaccagctggaaaagctgcacgaactgggcatcacggccgtgcag
ctcaacagcagcctgtcgcgcgccgaggaagacgacgccatcgcccgcatcgcccagggc
ggcaggctcatcatcttttgcacgccggaacgtcttaccaataccgccttcctgtccctg
ctggccggcgcgccgcccagcctggtcgtcatcgatgaagcccattgtatttcccagtgg
ggccacgacttccgtcccgcctacctggacatcgcggccgccctgcgcgcgctgggccgc
ccgcccgtgctggcgttgaccgccacggccaccggggaagtaatggacgatatcgatacg
caactcgaagcgcgcaagctgaacgtcatcaataccggcatctaccgcgccaatttgcgc
taccgcgtgatccaggtcacgaatgcgggagaaaaacaggacgaagtcctgcgcctgctg
cgcgagacgccgggcgtgggcatcgtgtacgcggccacggtcaaggccgtcgaagacctg
gcggcgcggctggaagcgttgggcgagagtgtcacctgctaccacggcaagctggcggcg
cgcgagcgcaagcaccaccaggacttgttcatgaatggcgagcgccgcatcatggtggcc
accaacgcctttggcatgggcatcgacaagcccgacacgcgcttcgtcattcacttgcag
gtgccggccaacctggaggcgtactaccaggaatcgggccgcgcagggcgcgacggcttg
cccgccgactgcaccttgctgtacttccaggaagacaagcgggtgcagcaattttttctg
gccaagcattacccgacggccgaggaactggccgccatcgtggcggcagcgcaagaattg
ccggccacgtttactttcgctgcgctggcgtccagcctgcccgatttttctgacggccac
ctgaaggtatgcctgaaactgttgaaagacggcaagctgctgcgccaggaccgcaagctg
ggctacagcctgaaagcgccctcggccagctcgcccgcgtatgcgcagctggcgcagatc
tacgtcgacaagcaggagcgcgacaaacaggcgctcgagcagatggtggcctatgcgcaa
agcggcttgtgccgctggaaactgctgctcgattattttggcgatgccggcgatttccag
cgctgctgcacctgcgacaattgcctgtcgccgcccgcgctggccgcgcccatttccctc
gacgagttgcccccggtcccgtcccaagcgccatcgccgccgccagcgccgcagattgcc
gtcggcagccgcgtgcgcgtgccccgctaccagatcggtaccgtgctgtcggtggcgggc
gaccaggtcacgattgcctttccggaaaacaccacgcgcaccttcatggccgagtttgtc
gcaccggcgtga
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