Janthinobacterium sp. HH102: JAB4_045790
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Entry
JAB4_045790 CDS
T08624
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
jah
Janthinobacterium sp. HH102
Brite
KEGG Orthology (KO) [BR:
jah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jah03019
]
JAB4_045790
Enzymes [BR:
jah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JAB4_045790
Messenger RNA biogenesis [BR:
jah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JAB4_045790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
AAA_30
SRP54
TsaE
ResIII
SLFN-g3_helicase
Myosin_head
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
QOU75097
UniProt:
A0A853T412
LinkDB
All DBs
Position
complement(5105767..5109972)
Genome browser
AA seq
1401 aa
AA seq
DB search
MSSASNKSSPPSNVANVPASGGVATPAATPVQGRQRPPVSQQRQQAPRAEQQKEQQRQQQ
QQRAPRPPREGQAPRDDQASREERESRDAARAAREAEKAFRNPLPPITYPEDLPVSGRRE
EIAKALTENQVIIVSGETGSGKTTQLPKICLELGRGQKGMIGHTQPRRIAASSTAKRIAQ
ELGTPLGETVGFKVRFNDTLSRGASVKLMTDGILLAETQTDPLLKNYDTIIIDEAHERSL
NIDFLLGYLKQLLPRRPDLKIIITSATIDAERFSRHFGTPEKPAPVIEVSGRLYQVEVRY
RPVEREQVAMPGAASADKPGQRTAAAREKRDLMDAVVDGVEELCRIGSGDVLVFLPGERE
IRDCAEALRKHHPPHVEILPLFARLSAEEQERVFKTSNARRIVLATNVAETSLTVPGIRY
VVDAGLARVKRYSYRNKVEQLQVEPIAQSAANQRAGRCGRVADGVCIRLYEEQDYLLRPK
FTEPEILRSSLAAVILRMKSLHLTDVETFPFIEPPLARAIADGYQLLQELGAVDEVNKLT
PLGNKLAKLPLDPRVGRMILAALDNACLTEVLIVASALSVQDPRDRPMEHQQAADEAHKK
FADEKSEFLSYLKIWRWFESAIEHKKTNRQLQDNCRTNFLSQMRLREWRDVHSQLLTIVK
EQGWRLNEAPATYDNLHMALLTGLLGNIGFKGEDEPGAGYLGARGIKFHIWPGSSLLKKP
GKWIMAAELVDTTRLYARCVAQIQPEWLEKVGEHLLKKSWGEPRWEKRSAQVTASERATL
YGLVVYSQRRINYGNFNLPEAREIFIRDALVGGDFDTRAPFFAHNHKLIKDIENLEHKSR
RLDVLVDDELIAAFYDKLLPADVCNGAGFEKWHKEATRENPKLLYLNREELMRHEAAGVT
TDLFPKTMSVTGLEMGLTYHFEPGSVRDGVTLSVPLYALNQLPRERCEWLVPGMLKEKVH
LLLKSLPQKLRRHCVPLPDYAAKFCERVHEAGVFGRGDLIDAIILDIRTQITINVLTTDF
KPETLPAHHFMNFKVIDEHGRQLDMGRNLATLQAEFGGQARQSFQKLAEVSGVSGTGTPG
AKVAGAQVASRLQAQGATVAAGKGASAAAPAPPNATVSQHMGLTAWTFGELPELLEIVQG
KLTLIGFPALVDKGTHCDLEVFDDPTVAARTHKVGLRRLFALQMKEQIKYVEKSIPGLQQ
MGMQFMALGSQEELREQIINKALDIACLQDPLPLDAASFAKRQAEGKSRLVLLVNEIARL
LSQVLTEFHGLPKRLQNIPAAAATDIQAQLQGLVHKRFLTENEYTQLAHFPRYLKAINVR
LEKLRADPARDTKLMAEWQSAAAPYLRQAKDRQAGKNTDPKLVEFRWMLEELRVSLFAQE
LRTPMPVSAKRLQKVWESMQR
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagccagcaataagtcttcccctccttccaacgttgcaaatgtgcccgccagc
gggggtgttgccacgcctgccgccacgcctgtgcaaggccgccagcgcccgcccgtgagc
cagcaaaggcagcaagcgccgcgcgcggaacagcagaaagagcaacagcgacagcaacag
cagcagcgcgcgccgcgtccgccgcgcgaggggcaggcgccgcgcgatgaccaggccagc
cgcgaagagcgcgagagccgtgacgccgcgcgcgccgcgcgcgaggcggaaaaggccttc
cgcaatccgctgccaccgattacgtatccggaagacttgcccgtctcgggccggcgcgaa
gaaatcgccaaggccttgacggaaaaccaggtcatcatcgtctcgggcgagacgggttcc
ggcaagacgacgcagttgccgaagatttgcctggaactgggacgcggacagaagggcatg
atcggccacacgcagccgcgccgcatcgccgcctcgtcgacggccaagcgcatcgcgcag
gaactgggcacgcccttgggcgaaaccgtgggtttcaaggtgcgctttaacgataccctg
agccgtggcgcgtccgtcaagctgatgacggacggcattctactggccgagacgcagacc
gacccgttgttgaaaaactacgacaccatcatcatcgatgaagcgcacgaacgcagcctg
aacatcgacttcctgcttggttatttaaagcagctgctgccgcgccggcccgacctgaag
atcatcatcacctcggccaccatcgatgccgagcgcttctcgcgccatttcggcacgccg
gaaaaaccggcacccgtgatcgaagtgtcgggccggttgtaccaggtggaagtgcgctac
cgtcccgtggaacgcgagcaggtggccatgccgggtgccgcgagcgccgacaagcccggc
cagcgcaccgccgccgcgcgcgaaaagcgcgacttgatggatgccgtcgtcgatggcgtg
gaagagctgtgccgcatcggctcgggcgacgtgctggtgttcctgcccggcgagcgcgaa
atccgcgactgcgccgaagcgctgcgcaagcaccatccgccgcatgtggagattttgccg
ctgttcgcccgcctgtcggccgaggagcaggaacgcgtcttcaagaccagcaatgcgcgc
cgcatcgtgctggccaccaacgtggcggaaacctcgctgacggtgcccggcatccgctac
gtggtcgacgcgggcctggcgcgcgtgaaacgctacagctaccgcaacaaggtcgaacag
ctgcaggtcgaaccgatcgcccagtcggccgccaaccagcgcgccgggcgttgcggccgc
gtggccgacggcgtgtgcatccgtttgtacgaagagcaggattatctgctgcggcccaaa
ttcacggagccggaaatcctgcgctcctcgctggccgccgtcatcctgcgcatgaagtcc
ctgcacctgacggacgtggaaaccttccccttcatcgagccgccgctggcgcgcgccatc
gccgacggttaccagctgctgcaggaactcggtgctgtcgatgaagtcaataaactgacg
ccgttgggcaacaagctggccaagctgccgctggacccgcgcgtgggccgcatgatcctg
gccgcgctcgataacgcgtgtctgacggaagtgctgatcgtcgcttccgctctgtccgtg
caagacccgcgcgaccgcccgatggaacaccagcaggcggccgacgaagcgcacaagaaa
ttcgccgatgaaaagtcggagttcctcagctacctgaagatctggcgctggttcgagtcc
gccatcgagcacaagaaaaccaaccgccagctgcaggataattgccgcacgaatttcctg
tcgcagatgcgcttgcgcgaatggcgcgacgtgcactcgcagttgttgaccatcgtcaag
gagcagggctggcgcctgaatgaagcgccggccacctacgacaatctgcacatggccttg
ctgactggcttgctgggcaatatcggtttcaagggcgaggacgagccgggcgccgggtat
ctgggcgcgcgcggcatcaagttccatatctggcccggttcttcgctgctgaaaaagccg
ggcaagtggatcatggcggccgaactggtcgacacgacgcggctgtacgcgcgctgcgtg
gcgcagatccagcccgagtggctggaaaaagtcggcgagcacctgctgaagaaatcgtgg
ggcgagccgcgctgggaaaaacgctcggcgcaagtgacggcgtccgaacgcgcgactttg
tacgggctggtggtgtacagccagcgccgcatcaattacggcaatttcaacttgccggaa
gcgcgcgagattttcatccgcgacgcgctcgttggcggcgacttcgacacgcgtgcgccc
ttctttgcgcacaaccacaaactgatcaaggatatcgaaaacctcgagcacaaatcgcgc
cggctggacgtgctggtcgacgatgagctgatcgccgctttctacgacaagctgctgccg
gcggacgtgtgcaatggcgccggtttcgagaagtggcacaaggaagccacgcgcgagaac
ccgaagctgctgtacctgaaccgcgaagagctgatgcgccacgaagcggccggcgtgacg
acggacctgttcccgaaaaccatgtccgtgacgggcctggaaatgggactcacgtaccac
ttcgagccgggcagcgtgcgcgatggcgtgaccttgagcgtgccgctatatgccttgaac
cagttgccgcgcgagcgctgcgaatggctggtgccgggcatgctgaaggaaaaagtgcat
ctgctattaaaatccttgccgcaaaagctgcgccgccactgcgtgccgctgcccgattac
gcggcgaaattctgcgagcgcgtgcatgaagcgggcgtgttcggccgcggtgatttgatc
gacgccatcatcctcgatatccgcacgcagatcaccatcaacgtgctgacgacggatttc
aagccggaaaccctgcctgcccatcacttcatgaatttcaaggtgatcgacgagcatggc
cgccagctggacatgggccgcaacctggccaccctgcaggcggaattcggcggccaggcg
cgccagagtttccagaagctggccgaagtgtcgggcgtctcgggcacgggcacgcccggt
gccaaggtggccggcgcgcaagtggcgtcgcggctgcaggcacagggcgctacagttgca
gcaggcaagggcgcatccgccgccgcgccggcgcctccgaacgccaccgtctcgcagcac
atgggtttgacggcctggaccttcggcgaattgccggagctgctcgaaatcgtgcagggc
aagctgaccttgatcggtttccctgccctcgtcgacaagggcacgcattgcgacctggaa
gtgtttgacgacccgaccgtggccgcgcgtacgcacaaggtcggtttgcgccgtttattt
gcgctgcaaatgaaggagcagatcaagtacgtcgagaaaagcatccccggcttgcagcag
atgggcatgcaattcatggccctgggttcgcaggaggagttgcgcgagcaaatcatcaac
aaggcgctcgacattgcttgcttgcaagatccgctgccgctggacgccgcctcgtttgcc
aagcgacaggcggaaggcaagtcgcgcctggtcttgctggtcaatgaaatcgcccgtttg
ctgtcgcaagtgctgacggaattccacggcttgccgaagcggctgcaaaatattcccgca
gcggcggccaccgatatccaggcgcagctgcagggcctcgtgcataaacgtttcctgacg
gaaaacgaatacacgcagctcgcgcatttcccccgctacttaaaagcgatcaatgtacgc
ctggaaaaactgcgcgccgaccccgcgcgcgacaccaagttgatggccgaatggcaatcg
gccgccgcgccgtatctgcgccaggccaaggaccgtcaggccggcaagaacacggatccg
aaactggtcgagttccgctggatgctggaagagctgcgcgtgtcgctgtttgcgcaggaa
ttgcgcacgccgatgcccgtgtctgccaagcgtttgcagaaggtgtgggaatcgatgcag
cggtag
DBGET
integrated database retrieval system
