Janthinobacterium sp. HH102: JAB4_046950
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Entry
JAB4_046950 CDS
T08624
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
jah
Janthinobacterium sp. HH102
Pathway
jah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JAB4_046950 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jah03019
]
JAB4_046950 (rne)
03009 Ribosome biogenesis [BR:
jah03009
]
JAB4_046950 (rne)
Enzymes [BR:
jah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JAB4_046950 (rne)
Messenger RNA biogenesis [BR:
jah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JAB4_046950 (rne)
Ribosome biogenesis [BR:
jah03009
]
Prokaryotic type
rRNA processing factors
JAB4_046950 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QOU75213
UniProt:
A0A853T2X0
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All DBs
Position
5225803..5228970
Genome browser
AA seq
1055 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARTYFREGVDVRNASVKEALREGQEIMVQVEKEERGNKGAALTSFVS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPAGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGAGKSANGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYDQAH
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFNTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSATIHVQVPVDVGAFLLNEKRGEVLKIENRHRIAVILIPNKHLETPH
YKLERIKHDDPRLEDSQASYNLAESAETDMAYSKRQKEEAKPRQEAVVKTITPDQPAPLV
ERKPVEAKPAPVAAPAAPQGLIAKIISFFTGAPAPVAPAPAPVAPAKPAGTDRGDRNSRG
PRGRGRNGKPGREEREPGQGRPAQDDAAKEAEALEKAARPPRPPRPPREPREARENGDTA
AAPRERGERPERAERPERAERPERAERPPRQPREGREPRADKAVVAEVKAEELALVGASA
SAINVVVASNGPESDAAPTSLLKAPANAGPEGEETENDVEGEEPRRRRRRGGRNRNRRDR
ETGELIESANGENDGQDAPVISFTVAPAPEAAADAAPVAVVAAAAVVAVAAPVEAAVVEV
VEVVEVAKVVDIAKVEEAAPAAEAAPVAAPVVAQAPVEVAAAQAEPAAAEPAPAAEYSFA
EKAEAAPAPAPVPAEVIVEAAPVVETVAVVETVIVAEEVPAAAPVAEAAPAVAQAAPVVA
EAAPAPVPAPVVAPAPAPVAAPASAPAPSPVPAPLDLDAVLGSAGLTLAATDPEKLRLAQ
EAAAKAVAPVRKPRERKPLPPQSDEPLIQVNTQRP
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgccacgcagcaagaagaactgcgcgtagcgattgtcgac
ggacaaaaactgatcgacatcgatatcgagacagccgggcgcgaacagcgcaaatccaac
atctacaagggcgtgatcacgcgcatcgagccatcgctcgaagcgtgcttcgtcagctat
ggcgaagaccgccacggcttcctgcctttcaaggaagttgcccgcacgtatttccgcgaa
ggcgtcgacgtccgtaacgcctccgtcaaggaagcgctgcgcgaaggccaggaaatcatg
gtgcaagtggaaaaggaagagcgcggcaacaagggcgccgccctgacctcgttcgtctcg
ctggccggccgttacctggtattgatgccgaacaacccgcgtggcggtggcgtatcgcgc
cgcgtggaaggggaagagcgccaggaattgcgcgaaaccatggataaactggacttgcct
gctggcatgtccgtgatcgcccgcaccgccggcatcggccgcaacgtcgatgaactgcag
tgggacttgaattacctgatgcaactgtggcgcgccatcgaaggcgccggcaagtcggcc
aacggcgcgttcctgatctaccaggaatcgtcgctcgtcatccgcgccatccgcgactac
ttccagcccgacatcggcgagatcctgatcgacaccgacgagatctacgaccaggcgcac
cagttcatgagccacgtgatgcccgacatggtgcaccgcgtaaaacgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgaacatcagatcgaaacggcctacagccgcacc
gtgccgctgccatcgggcggcgccatcgtcatcgaccacacggaagcgctggtctccgtc
gacgtcaactcggcccgcgccacgcgcggctcggacatcgagacgaccgccttcaacacc
aactgcgaagcggccgaagaagtggcccgccagctgcgtttgcgcgacctgggcggcttg
atcgtcatcgacttcatcgacatggaagtggcaaaaaatcaacgcgaagtggaacagcgc
ctgaaagatgcgctgcaccatgaccgtgcccgtgtacaaatgggcaagatttcccgcttc
ggcctgatggaactgtcgcgccagcgcctgcgcccttcgctgtccgaaggctcgcacgtg
acgtgcccgcgctgctccggcaccggccacatccgcgacacggaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaactcggccaccatccacgtgcag
gtgcccgtggacgtgggcgccttcctgctgaacgaaaagcgcggcgaagtactcaaaatc
gagaaccgtcaccgcatcgccgtgatcctgatcccgaacaagcatctggaaacgccgcac
tacaagctcgaacgcatcaagcacgacgatccgcgtctggaggacagccaggccagctac
aacctggccgaaagcgctgaaaccgacatggcgtacagcaagcgccagaaggaagaagcg
aagccgcgccaggaagccgtcgtcaagacgatcacccctgaccagccggcaccgctggtc
gagcgcaagcccgtcgaagcaaaaccggccccagtggccgcgcctgccgcgccgcaaggc
ctgatcgccaagatcatcagcttcttcaccggcgccccggcaccggtggcgccagcgccc
gcccctgtcgcaccggccaagccggccggcacggaccgtggcgaccgcaacagccgtggc
ccgcgtggccgtggccgtaacggcaagcctggccgcgaagagcgcgaacctggccagggc
cgcccagcccaggacgacgcggcgaaagaagcggaagcactggaaaaggcggcccgtccg
ccacgcccgccgcgtccgccacgcgaaccgcgtgaagcccgcgagaacggcgatacggca
gcggcaccacgcgaacggggtgaacgtcctgagcgcgcggaacgtcccgagcgcgcagag
cgtccggaacgtgccgagcgtccgccacgccagccacgcgaaggccgcgaaccacgcgcc
gacaaggctgttgttgctgaagtgaaagctgaagaactggccctggttggcgccagcgcc
agcgccatcaacgtggtcgtggcgtcaaacggccccgaatccgacgccgcgccaacgagc
ttgctgaaagcgccggcaaatgccggtcctgaaggcgaagagacggaaaacgacgtggaa
ggcgaagaaccgcgccgccgccgtcgtcgtggtggccgcaaccgcaaccgccgcgaccgc
gaaacgggcgagctgatcgaatcggcaaacggcgagaacgatggccaggacgcgccagtg
atcagctttacggtcgctccggcgccggaagctgccgctgatgctgctccggtcgccgtc
gtggccgccgccgctgtcgtcgccgtcgcggcgccggtggaagctgccgtcgtggaagtg
gtggaagtggtagaagtggccaaggtggtggacatcgccaaggtcgaggaagccgctcct
gccgctgaagcagcgccagttgctgcaccggtcgtagcgcaagcccctgtcgaagtggct
gcagcgcaagctgaaccagccgctgccgagccagcgccagctgccgagtacagctttgcc
gagaaagcggaagctgcaccggcgccagcgcctgttccagcggaagtcatcgtcgaagcg
gcaccggtcgtggaaacggttgctgtcgtggaaaccgtcatcgtggctgaggaagttcca
gcagcagcgccagtcgccgaagcggcgccggccgtggcgcaagccgcaccggtagttgcc
gaagctgcacctgctccggtaccagcacctgtcgttgctcctgcaccggcgcctgtcgct
gctccagcttccgcaccggctccatcgccggtgcctgcgccgctggacctggacgcagtg
ctcggttcggccggtctgaccctggctgccaccgatccggaaaaactgcgcctggcgcag
gaagcggccgccaaggcagtcgctcccgtgcgcaagccgcgcgaacgcaagccattgccg
ccgcaatcggatgagccgttgatccaggtcaacacgcaacgtccataa
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